miRNA display CGI


Results 21 - 40 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26858 5' -55.6 NC_005809.1 + 7302 0.68 0.491177
Target:  5'- cUCGCgGAUGGCGCCGUcgaUGGUCUGcGAa -3'
miRNA:   3'- -AGUGaCUGCCGCGGUA---ACUGGAC-CUg -5'
26858 5' -55.6 NC_005809.1 + 1001 0.68 0.480714
Target:  5'- cCGCUGcCcGCGCCAcUGGCCgGGAa -3'
miRNA:   3'- aGUGACuGcCGCGGUaACUGGaCCUg -5'
26858 5' -55.6 NC_005809.1 + 30974 0.68 0.469333
Target:  5'- gCACUGcugcccgGCGGCcaGCCGgcGGcCCUGGGCg -3'
miRNA:   3'- aGUGAC-------UGCCG--CGGUaaCU-GGACCUG- -5'
26858 5' -55.6 NC_005809.1 + 14356 0.68 0.460124
Target:  5'- gCGCgugGucguCGGCGUgGccGACCUGGACa -3'
miRNA:   3'- aGUGa--Cu---GCCGCGgUaaCUGGACCUG- -5'
26858 5' -55.6 NC_005809.1 + 25141 0.68 0.456062
Target:  5'- -uGCUGGCGGgGCCAcugcucaagggcGACgUGGGCg -3'
miRNA:   3'- agUGACUGCCgCGGUaa----------CUGgACCUG- -5'
26858 5' -55.6 NC_005809.1 + 20314 0.69 0.450005
Target:  5'- uUCGCUGACGGCcggcgaauacGCCAUcgcGGCCgacaaccaGGGCc -3'
miRNA:   3'- -AGUGACUGCCG----------CGGUAa--CUGGa-------CCUG- -5'
26858 5' -55.6 NC_005809.1 + 18580 0.69 0.450005
Target:  5'- cUCGCggUGACGGCcugGCCGUccgaGACUUGGAg -3'
miRNA:   3'- -AGUG--ACUGCCG---CGGUAa---CUGGACCUg -5'
26858 5' -55.6 NC_005809.1 + 36181 0.69 0.450005
Target:  5'- aUCACcGAgGGCGCCGcggcggccGACCUGGu- -3'
miRNA:   3'- -AGUGaCUgCCGCGGUaa------CUGGACCug -5'
26858 5' -55.6 NC_005809.1 + 13467 0.69 0.44001
Target:  5'- -gGC--GCGGUGUCGggcaUGACCUGGGCg -3'
miRNA:   3'- agUGacUGCCGCGGUa---ACUGGACCUG- -5'
26858 5' -55.6 NC_005809.1 + 17658 0.69 0.430143
Target:  5'- cCACgaucuUGAUGGCGUCGgcGGgCUGGGCg -3'
miRNA:   3'- aGUG-----ACUGCCGCGGUaaCUgGACCUG- -5'
26858 5' -55.6 NC_005809.1 + 27592 0.69 0.410805
Target:  5'- -aGCaGGCGGCGCCAgaUGGCgUGGuCg -3'
miRNA:   3'- agUGaCUGCCGCGGUa-ACUGgACCuG- -5'
26858 5' -55.6 NC_005809.1 + 16955 0.7 0.392017
Target:  5'- gCGCUGcUGGCGCCGcgccgccguggUUGccacuGCCUGGGCc -3'
miRNA:   3'- aGUGACuGCCGCGGU-----------AAC-----UGGACCUG- -5'
26858 5' -55.6 NC_005809.1 + 28035 0.7 0.392017
Target:  5'- gUCGCUGuugucCGGCGCCGgcGACgUGG-Cu -3'
miRNA:   3'- -AGUGACu----GCCGCGGUaaCUGgACCuG- -5'
26858 5' -55.6 NC_005809.1 + 26887 0.7 0.356159
Target:  5'- -gGCUGACGGCaGUg--UGACCUuGGGCa -3'
miRNA:   3'- agUGACUGCCG-CGguaACUGGA-CCUG- -5'
26858 5' -55.6 NC_005809.1 + 10222 0.71 0.339115
Target:  5'- ----cGGCGGCGaCCGcagcGACCUGGGCg -3'
miRNA:   3'- agugaCUGCCGC-GGUaa--CUGGACCUG- -5'
26858 5' -55.6 NC_005809.1 + 19472 0.71 0.339115
Target:  5'- gUCGCcGugGGCGCCGccgUUGGCgucgGGGCg -3'
miRNA:   3'- -AGUGaCugCCGCGGU---AACUGga--CCUG- -5'
26858 5' -55.6 NC_005809.1 + 13064 0.71 0.314675
Target:  5'- aCAgcCUGuCGuCGCCAUUGACgUGGACa -3'
miRNA:   3'- aGU--GACuGCcGCGGUAACUGgACCUG- -5'
26858 5' -55.6 NC_005809.1 + 11836 0.73 0.256097
Target:  5'- -gACcGGCcGCGCCgcgGUUGGCCUGGGCg -3'
miRNA:   3'- agUGaCUGcCGCGG---UAACUGGACCUG- -5'
26858 5' -55.6 NC_005809.1 + 39009 0.73 0.230316
Target:  5'- gUCGCUGaaauuuauGCGGCGCgGUUGGCg-GGACu -3'
miRNA:   3'- -AGUGAC--------UGCCGCGgUAACUGgaCCUG- -5'
26858 5' -55.6 NC_005809.1 + 7554 0.75 0.180271
Target:  5'- cUCGauCUG-CGGCGCCAccGGCUUGGACa -3'
miRNA:   3'- -AGU--GACuGCCGCGGUaaCUGGACCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.