miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26859 3' -54.6 NC_005809.1 + 25616 0.66 0.663818
Target:  5'- aCCACGgcgGCGCGGuc--GCCaGCAGCg -3'
miRNA:   3'- cGGUGCa--CGCGCUugacCGGaUGUUG- -5'
26859 3' -54.6 NC_005809.1 + 19483 0.68 0.540287
Target:  5'- cGCCAgGUGCcgGUGGGCaGGCCgcUGCGAa -3'
miRNA:   3'- -CGGUgCACG--CGCUUGaCCGG--AUGUUg -5'
26859 3' -54.6 NC_005809.1 + 23291 0.68 0.562408
Target:  5'- cGCCACGaaugccuguuUGCGgcCGGcACUGGCCgggAUGACg -3'
miRNA:   3'- -CGGUGC----------ACGC--GCU-UGACCGGa--UGUUG- -5'
26859 3' -54.6 NC_005809.1 + 38738 0.68 0.562408
Target:  5'- cGCaaaGUGCGCuGGAUUGGUC-GCAACg -3'
miRNA:   3'- -CGgugCACGCG-CUUGACCGGaUGUUG- -5'
26859 3' -54.6 NC_005809.1 + 39637 0.67 0.584766
Target:  5'- uGCCGCGcGaCGCGGugUgGGCCgGCAu- -3'
miRNA:   3'- -CGGUGCaC-GCGCUugA-CCGGaUGUug -5'
26859 3' -54.6 NC_005809.1 + 26333 0.67 0.629907
Target:  5'- -aCGCGcacCGCGAACUGGCCgcGCcGCu -3'
miRNA:   3'- cgGUGCac-GCGCUUGACCGGa-UGuUG- -5'
26859 3' -54.6 NC_005809.1 + 39745 0.66 0.641223
Target:  5'- cGCCgcugcGCGUGgcCGCGAGCaccUGGCCcgACGAa -3'
miRNA:   3'- -CGG-----UGCAC--GCGCUUG---ACCGGa-UGUUg -5'
26859 3' -54.6 NC_005809.1 + 42167 0.66 0.641223
Target:  5'- cGCgACGUGCugcucaacagucGCGcGCUGGCCgcgcuCAAUc -3'
miRNA:   3'- -CGgUGCACG------------CGCuUGACCGGau---GUUG- -5'
26859 3' -54.6 NC_005809.1 + 25194 0.66 0.65253
Target:  5'- uGUCAUGagcacGCGCGAccGCUGGCC--CGGCu -3'
miRNA:   3'- -CGGUGCa----CGCGCU--UGACCGGauGUUG- -5'
26859 3' -54.6 NC_005809.1 + 28565 0.68 0.518466
Target:  5'- gGCCAuCGcgGCGCGcACgucGGCCaccgGCAGCg -3'
miRNA:   3'- -CGGU-GCa-CGCGCuUGa--CCGGa---UGUUG- -5'
26859 3' -54.6 NC_005809.1 + 21180 0.68 0.518466
Target:  5'- gGCCuGC-UGCGCGGccugcuGCUGGUCUGCGc- -3'
miRNA:   3'- -CGG-UGcACGCGCU------UGACCGGAUGUug -5'
26859 3' -54.6 NC_005809.1 + 11584 0.69 0.497004
Target:  5'- uGCCGCccaggGcCGCcGGCUGGCCgccggGCAGCa -3'
miRNA:   3'- -CGGUGca---C-GCGcUUGACCGGa----UGUUG- -5'
26859 3' -54.6 NC_005809.1 + 4801 0.74 0.252029
Target:  5'- cGCCggcugGCGcUGCGgGAuuGCUGGCCgGCGACa -3'
miRNA:   3'- -CGG-----UGC-ACGCgCU--UGACCGGaUGUUG- -5'
26859 3' -54.6 NC_005809.1 + 31049 0.72 0.323863
Target:  5'- gGCCaACGUGCGCGAAggcccgaacaucaggGGCCUGguGCc -3'
miRNA:   3'- -CGG-UGCACGCGCUUga-------------CCGGAUguUG- -5'
26859 3' -54.6 NC_005809.1 + 2348 0.72 0.334574
Target:  5'- gGCgCGCGUGCGcCGcAAUUcGGCCUGCAc- -3'
miRNA:   3'- -CG-GUGCACGC-GC-UUGA-CCGGAUGUug -5'
26859 3' -54.6 NC_005809.1 + 5620 0.71 0.387311
Target:  5'- aGCCACG-GCgucgauguugGCGAGgUGGCCguacACGGCg -3'
miRNA:   3'- -CGGUGCaCG----------CGCUUgACCGGa---UGUUG- -5'
26859 3' -54.6 NC_005809.1 + 8873 0.7 0.43524
Target:  5'- cGCCACGaagcggGCGCGGGCaucauugugaaUGGCgCUAuCGGCg -3'
miRNA:   3'- -CGGUGCa-----CGCGCUUG-----------ACCG-GAU-GUUG- -5'
26859 3' -54.6 NC_005809.1 + 37027 0.7 0.444226
Target:  5'- aGCCAUGcGCGUGAuugaccagaagcuGCcGGCCUGgAACu -3'
miRNA:   3'- -CGGUGCaCGCGCU-------------UGaCCGGAUgUUG- -5'
26859 3' -54.6 NC_005809.1 + 20316 0.69 0.47595
Target:  5'- gGCCGguUGCgauGCGGGCUGGCCUucaguggucguuGCGGCu -3'
miRNA:   3'- -CGGUgcACG---CGCUUGACCGGA------------UGUUG- -5'
26859 3' -54.6 NC_005809.1 + 36077 0.69 0.47595
Target:  5'- aCUACGgcaagcGCGUGAAUgcgGGCCUGCGcgGCg -3'
miRNA:   3'- cGGUGCa-----CGCGCUUGa--CCGGAUGU--UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.