Results 1 - 20 of 33 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26859 | 5' | -56.1 | NC_005809.1 | + | 23225 | 0.66 | 0.638167 |
Target: 5'- aCGGcaauucCGcCGCCuGGCG-CCUGUCCg -3' miRNA: 3'- -GCCaaa---GCaGUGG-CCGCuGGACAGGg -5' |
|||||||
26859 | 5' | -56.1 | NC_005809.1 | + | 25323 | 0.66 | 0.638167 |
Target: 5'- cCGGcgcUCGUCGCCGG-GA-UUGUCCa -3' miRNA: 3'- -GCCaa-AGCAGUGGCCgCUgGACAGGg -5' |
|||||||
26859 | 5' | -56.1 | NC_005809.1 | + | 6828 | 0.66 | 0.638167 |
Target: 5'- gGGUUUCGUCGuugcccUCGGCGACg-G-CCUu -3' miRNA: 3'- gCCAAAGCAGU------GGCCGCUGgaCaGGG- -5' |
|||||||
26859 | 5' | -56.1 | NC_005809.1 | + | 4815 | 0.66 | 0.638167 |
Target: 5'- gCGGgaUUGcUgGCCGGCGACagGUCgCCg -3' miRNA: 3'- -GCCaaAGC-AgUGGCCGCUGgaCAG-GG- -5' |
|||||||
26859 | 5' | -56.1 | NC_005809.1 | + | 9375 | 0.66 | 0.616248 |
Target: 5'- nCGGaUUCGcCAgCGGUGGCC-GUgCCg -3' miRNA: 3'- -GCCaAAGCaGUgGCCGCUGGaCAgGG- -5' |
|||||||
26859 | 5' | -56.1 | NC_005809.1 | + | 30349 | 0.66 | 0.616248 |
Target: 5'- -----cUGUUGCCGGUGugCUgcGUCCCg -3' miRNA: 3'- gccaaaGCAGUGGCCGCugGA--CAGGG- -5' |
|||||||
26859 | 5' | -56.1 | NC_005809.1 | + | 12896 | 0.66 | 0.616248 |
Target: 5'- uGGUgUCGUCGCCuuuGGCGaugcgcucgGCCgcgCCCa -3' miRNA: 3'- gCCAaAGCAGUGG---CCGC---------UGGacaGGG- -5' |
|||||||
26859 | 5' | -56.1 | NC_005809.1 | + | 9015 | 0.67 | 0.583493 |
Target: 5'- cCGGaUUCGcCAgCGGUGGCC-GUgCCg -3' miRNA: 3'- -GCCaAAGCaGUgGCCGCUGGaCAgGG- -5' |
|||||||
26859 | 5' | -56.1 | NC_005809.1 | + | 9351 | 0.67 | 0.583493 |
Target: 5'- cCGGaUUCGcCAgCGGUGGCC-GUgCCg -3' miRNA: 3'- -GCCaAAGCaGUgGCCGCUGGaCAgGG- -5' |
|||||||
26859 | 5' | -56.1 | NC_005809.1 | + | 9159 | 0.67 | 0.583493 |
Target: 5'- cCGGaUUCGcCAgCGGUGGCC-GUgCCg -3' miRNA: 3'- -GCCaAAGCaGUgGCCGCUGGaCAgGG- -5' |
|||||||
26859 | 5' | -56.1 | NC_005809.1 | + | 9111 | 0.67 | 0.583493 |
Target: 5'- cCGGaUUCGcCAgCGGUGGCC-GUgCCg -3' miRNA: 3'- -GCCaAAGCaGUgGCCGCUGGaCAgGG- -5' |
|||||||
26859 | 5' | -56.1 | NC_005809.1 | + | 9207 | 0.67 | 0.583493 |
Target: 5'- cCGGaUUCGcCAgCGGUGGCC-GUgCCg -3' miRNA: 3'- -GCCaAAGCaGUgGCCGCUGGaCAgGG- -5' |
|||||||
26859 | 5' | -56.1 | NC_005809.1 | + | 9255 | 0.67 | 0.583493 |
Target: 5'- cCGGaUUCGcCAgCGGUGGCC-GUgCCg -3' miRNA: 3'- -GCCaAAGCaGUgGCCGCUGGaCAgGG- -5' |
|||||||
26859 | 5' | -56.1 | NC_005809.1 | + | 9303 | 0.67 | 0.583493 |
Target: 5'- cCGGaUUCGcCAgCGGUGGCC-GUgCCg -3' miRNA: 3'- -GCCaAAGCaGUgGCCGCUGGaCAgGG- -5' |
|||||||
26859 | 5' | -56.1 | NC_005809.1 | + | 14415 | 0.67 | 0.583493 |
Target: 5'- uGGg--CGUCGCCaGGCGcGCCUGcggCaCCg -3' miRNA: 3'- gCCaaaGCAGUGG-CCGC-UGGACa--G-GG- -5' |
|||||||
26859 | 5' | -56.1 | NC_005809.1 | + | 12023 | 0.67 | 0.583493 |
Target: 5'- gCGGc--CGUgGCCGGCGAgguCUUG-CCCa -3' miRNA: 3'- -GCCaaaGCAgUGGCCGCU---GGACaGGG- -5' |
|||||||
26859 | 5' | -56.1 | NC_005809.1 | + | 30987 | 0.67 | 0.572643 |
Target: 5'- aCGGUggaCGaUCugCucacgcGCGACCUGUCCa -3' miRNA: 3'- -GCCAaa-GC-AGugGc-----CGCUGGACAGGg -5' |
|||||||
26859 | 5' | -56.1 | NC_005809.1 | + | 34537 | 0.67 | 0.570479 |
Target: 5'- gCGGUUgagcgucgaggcUGUCACCGGCGAagCUGgcgCCa -3' miRNA: 3'- -GCCAAa-----------GCAGUGGCCGCUg-GACa--GGg -5' |
|||||||
26859 | 5' | -56.1 | NC_005809.1 | + | 25814 | 0.68 | 0.540416 |
Target: 5'- -----aCGUCGCCGGUGGCUacgCCCa -3' miRNA: 3'- gccaaaGCAGUGGCCGCUGGacaGGG- -5' |
|||||||
26859 | 5' | -56.1 | NC_005809.1 | + | 31014 | 0.68 | 0.540416 |
Target: 5'- uGGcUUCGaUgACCGGCGGgCaGUCCUa -3' miRNA: 3'- gCCaAAGC-AgUGGCCGCUgGaCAGGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home