miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26859 5' -56.1 NC_005809.1 + 4815 0.66 0.638167
Target:  5'- gCGGgaUUGcUgGCCGGCGACagGUCgCCg -3'
miRNA:   3'- -GCCaaAGC-AgUGGCCGCUGgaCAG-GG- -5'
26859 5' -56.1 NC_005809.1 + 5917 0.68 0.529806
Target:  5'- cCGGcaucuUUUCGcCGCUGGCGGCa--UCCCa -3'
miRNA:   3'- -GCC-----AAAGCaGUGGCCGCUGgacAGGG- -5'
26859 5' -56.1 NC_005809.1 + 6828 0.66 0.638167
Target:  5'- gGGUUUCGUCGuugcccUCGGCGACg-G-CCUu -3'
miRNA:   3'- gCCAAAGCAGU------GGCCGCUGgaCaGGG- -5'
26859 5' -56.1 NC_005809.1 + 8523 0.7 0.428877
Target:  5'- -----aUGUCGCCGGCGAaCUUG-CCCa -3'
miRNA:   3'- gccaaaGCAGUGGCCGCU-GGACaGGG- -5'
26859 5' -56.1 NC_005809.1 + 9015 0.67 0.583493
Target:  5'- cCGGaUUCGcCAgCGGUGGCC-GUgCCg -3'
miRNA:   3'- -GCCaAAGCaGUgGCCGCUGGaCAgGG- -5'
26859 5' -56.1 NC_005809.1 + 9111 0.67 0.583493
Target:  5'- cCGGaUUCGcCAgCGGUGGCC-GUgCCg -3'
miRNA:   3'- -GCCaAAGCaGUgGCCGCUGGaCAgGG- -5'
26859 5' -56.1 NC_005809.1 + 9159 0.67 0.583493
Target:  5'- cCGGaUUCGcCAgCGGUGGCC-GUgCCg -3'
miRNA:   3'- -GCCaAAGCaGUgGCCGCUGGaCAgGG- -5'
26859 5' -56.1 NC_005809.1 + 9207 0.67 0.583493
Target:  5'- cCGGaUUCGcCAgCGGUGGCC-GUgCCg -3'
miRNA:   3'- -GCCaAAGCaGUgGCCGCUGGaCAgGG- -5'
26859 5' -56.1 NC_005809.1 + 9255 0.67 0.583493
Target:  5'- cCGGaUUCGcCAgCGGUGGCC-GUgCCg -3'
miRNA:   3'- -GCCaAAGCaGUgGCCGCUGGaCAgGG- -5'
26859 5' -56.1 NC_005809.1 + 9303 0.67 0.583493
Target:  5'- cCGGaUUCGcCAgCGGUGGCC-GUgCCg -3'
miRNA:   3'- -GCCaAAGCaGUgGCCGCUGGaCAgGG- -5'
26859 5' -56.1 NC_005809.1 + 9351 0.67 0.583493
Target:  5'- cCGGaUUCGcCAgCGGUGGCC-GUgCCg -3'
miRNA:   3'- -GCCaAAGCaGUgGCCGCUGGaCAgGG- -5'
26859 5' -56.1 NC_005809.1 + 9375 0.66 0.616248
Target:  5'- nCGGaUUCGcCAgCGGUGGCC-GUgCCg -3'
miRNA:   3'- -GCCaAAGCaGUgGCCGCUGGaCAgGG- -5'
26859 5' -56.1 NC_005809.1 + 12023 0.67 0.583493
Target:  5'- gCGGc--CGUgGCCGGCGAgguCUUG-CCCa -3'
miRNA:   3'- -GCCaaaGCAgUGGCCGCU---GGACaGGG- -5'
26859 5' -56.1 NC_005809.1 + 12896 0.66 0.616248
Target:  5'- uGGUgUCGUCGCCuuuGGCGaugcgcucgGCCgcgCCCa -3'
miRNA:   3'- gCCAaAGCAGUGG---CCGC---------UGGacaGGG- -5'
26859 5' -56.1 NC_005809.1 + 14415 0.67 0.583493
Target:  5'- uGGg--CGUCGCCaGGCGcGCCUGcggCaCCg -3'
miRNA:   3'- gCCaaaGCAGUGG-CCGC-UGGACa--G-GG- -5'
26859 5' -56.1 NC_005809.1 + 18460 0.68 0.540416
Target:  5'- aCGGUcgCGgCGCCGGCGGCgUcggccgauucGUCCa -3'
miRNA:   3'- -GCCAaaGCaGUGGCCGCUGgA----------CAGGg -5'
26859 5' -56.1 NC_005809.1 + 20811 0.69 0.467974
Target:  5'- -----cCGU-GCCgGGCGGCCUGUCCUa -3'
miRNA:   3'- gccaaaGCAgUGG-CCGCUGGACAGGG- -5'
26859 5' -56.1 NC_005809.1 + 22589 0.68 0.498462
Target:  5'- gCGaGUUcuacgCGgaCAUCGGCGGCCUG-CCCg -3'
miRNA:   3'- -GC-CAAa----GCa-GUGGCCGCUGGACaGGG- -5'
26859 5' -56.1 NC_005809.1 + 23225 0.66 0.638167
Target:  5'- aCGGcaauucCGcCGCCuGGCG-CCUGUCCg -3'
miRNA:   3'- -GCCaaa---GCaGUGG-CCGCuGGACAGGg -5'
26859 5' -56.1 NC_005809.1 + 24126 0.69 0.448189
Target:  5'- aGGggUCGUaguccaGCCGGCugcgcGCCUGgCCCa -3'
miRNA:   3'- gCCaaAGCAg-----UGGCCGc----UGGACaGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.