miRNA display CGI


Results 21 - 40 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2686 3' -61.9 NC_001491.2 + 111541 0.68 0.529037
Target:  5'- gUCUcGUGCcaaugaGGCGUuugUGcGCGucGCGCGCGCCu -3'
miRNA:   3'- -AGA-CGCG------CCGCG---AC-CGU--UGCGCGCGG- -5'
2686 3' -61.9 NC_001491.2 + 115247 0.68 0.529037
Target:  5'- cCU-CGCGGCGCUauggguuccgGGCccaGugGUGCGCUu -3'
miRNA:   3'- aGAcGCGCCGCGA----------CCG---UugCGCGCGG- -5'
2686 3' -61.9 NC_001491.2 + 4272 0.68 0.519558
Target:  5'- cCUGCGCcucGGCGUaGcGCGAgGCG-GCCa -3'
miRNA:   3'- aGACGCG---CCGCGaC-CGUUgCGCgCGG- -5'
2686 3' -61.9 NC_001491.2 + 1962 0.68 0.519558
Target:  5'- --aGCGCacGGCGCaGGCGACccgcggagucaGgGCGCCc -3'
miRNA:   3'- agaCGCG--CCGCGaCCGUUG-----------CgCGCGG- -5'
2686 3' -61.9 NC_001491.2 + 27087 0.68 0.510146
Target:  5'- --cGCGCGGCcaggccuccGCgGGCGGCcCGgCGCCg -3'
miRNA:   3'- agaCGCGCCG---------CGaCCGUUGcGC-GCGG- -5'
2686 3' -61.9 NC_001491.2 + 10274 0.68 0.510146
Target:  5'- cUCgGCGCGGCGCcGGUggaGACcCaCGCCg -3'
miRNA:   3'- -AGaCGCGCCGCGaCCG---UUGcGcGCGG- -5'
2686 3' -61.9 NC_001491.2 + 141584 0.68 0.510146
Target:  5'- aUUGCu---CGCUGGCAugGCGCGaCCu -3'
miRNA:   3'- aGACGcgccGCGACCGUugCGCGC-GG- -5'
2686 3' -61.9 NC_001491.2 + 86344 0.68 0.500806
Target:  5'- --aGCGUGGaGCUGGUuGCG-GCGCUg -3'
miRNA:   3'- agaCGCGCCgCGACCGuUGCgCGCGG- -5'
2686 3' -61.9 NC_001491.2 + 7670 0.68 0.500806
Target:  5'- -gUGUGCGGCuaUGGgGGgGgGCGCUa -3'
miRNA:   3'- agACGCGCCGcgACCgUUgCgCGCGG- -5'
2686 3' -61.9 NC_001491.2 + 51173 0.68 0.500806
Target:  5'- aCUGCGgGuuguuGCGCUcGGCAAaa-GCGCCg -3'
miRNA:   3'- aGACGCgC-----CGCGA-CCGUUgcgCGCGG- -5'
2686 3' -61.9 NC_001491.2 + 12479 0.68 0.500806
Target:  5'- --cGCcCGGCG--GGCGGCGgGCGCCc -3'
miRNA:   3'- agaCGcGCCGCgaCCGUUGCgCGCGG- -5'
2686 3' -61.9 NC_001491.2 + 69406 0.68 0.500806
Target:  5'- aUCcGCGCGGCuCUGuaCGGCGUgcuGCGCCa -3'
miRNA:   3'- -AGaCGCGCCGcGACc-GUUGCG---CGCGG- -5'
2686 3' -61.9 NC_001491.2 + 73400 0.68 0.497091
Target:  5'- cCUGCgaGCGGUGCagGGUAugGacuagucuaaccaGCGCCa -3'
miRNA:   3'- aGACG--CGCCGCGa-CCGUugCg------------CGCGG- -5'
2686 3' -61.9 NC_001491.2 + 27186 0.68 0.491542
Target:  5'- --aGCGCGGCaGCgagaCcGCGUGCGCCg -3'
miRNA:   3'- agaCGCGCCG-CGacc-GuUGCGCGCGG- -5'
2686 3' -61.9 NC_001491.2 + 139999 0.69 0.473258
Target:  5'- gUCaGaCGCGGaucaGUUGGCGAC-CGCGCUu -3'
miRNA:   3'- -AGaC-GCGCCg---CGACCGUUGcGCGCGG- -5'
2686 3' -61.9 NC_001491.2 + 126937 0.69 0.461558
Target:  5'- aCUGgG-GGCGCUauaccuucgcaagcGcGCAacggGCGCGCGCCg -3'
miRNA:   3'- aGACgCgCCGCGA--------------C-CGU----UGCGCGCGG- -5'
2686 3' -61.9 NC_001491.2 + 63399 0.69 0.43776
Target:  5'- gCUGCGUaugaGGCGUagcacGGCGACGUcuuccgugaGCGCCu -3'
miRNA:   3'- aGACGCG----CCGCGa----CCGUUGCG---------CGCGG- -5'
2686 3' -61.9 NC_001491.2 + 122883 0.7 0.428268
Target:  5'- gUCUGCGCcaagaaaugacucGGCGCUcguuggGGCAGCGCcacgaGUGUCc -3'
miRNA:   3'- -AGACGCG-------------CCGCGA------CCGUUGCG-----CGCGG- -5'
2686 3' -61.9 NC_001491.2 + 145085 0.7 0.420593
Target:  5'- gCUGCGCGGUcuCUGcGCGACGCG-GUg -3'
miRNA:   3'- aGACGCGCCGc-GAC-CGUUGCGCgCGg -5'
2686 3' -61.9 NC_001491.2 + 26736 0.7 0.386709
Target:  5'- gCUGCGUGGCGggGGaacagcucgggcuCGGCGCcCGCCa -3'
miRNA:   3'- aGACGCGCCGCgaCC-------------GUUGCGcGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.