miRNA display CGI


Results 1 - 18 of 18 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26860 3' -59.7 NC_005809.1 + 37041 0.66 0.385989
Target:  5'- gACC-UgGGCGgaaccuggGCGGCCGgCGuGUCCUAc -3'
miRNA:   3'- -UGGuAgUCGCa-------CGCCGGC-GU-CAGGAU- -5'
26860 3' -59.7 NC_005809.1 + 6585 0.66 0.385989
Target:  5'- cGCC-UCGGCcagGgGGCUGCGGUCUUu -3'
miRNA:   3'- -UGGuAGUCGca-CgCCGGCGUCAGGAu -5'
26860 3' -59.7 NC_005809.1 + 27476 0.66 0.368245
Target:  5'- aGCUAUuaCGGCGcGCGGUCGCAGcaaagcagCCUGc -3'
miRNA:   3'- -UGGUA--GUCGCaCGCCGGCGUCa-------GGAU- -5'
26860 3' -59.7 NC_005809.1 + 27423 0.66 0.368245
Target:  5'- cGCCuggcgCAccGCGcccgGCGGCCGCAGgcCCUGg -3'
miRNA:   3'- -UGGua---GU--CGCa---CGCCGGCGUCa-GGAU- -5'
26860 3' -59.7 NC_005809.1 + 29023 0.66 0.368245
Target:  5'- cGCCGUgGGCaccgagucagGCGGCCGaCAGUUCg- -3'
miRNA:   3'- -UGGUAgUCGca--------CGCCGGC-GUCAGGau -5'
26860 3' -59.7 NC_005809.1 + 18470 0.66 0.351069
Target:  5'- cGCCggCGGCGU-CGGCCGauucGUCCa- -3'
miRNA:   3'- -UGGuaGUCGCAcGCCGGCgu--CAGGau -5'
26860 3' -59.7 NC_005809.1 + 37786 0.67 0.342697
Target:  5'- cGCCAgcCGGCGUGCuGGgCGCAGUgUg- -3'
miRNA:   3'- -UGGUa-GUCGCACG-CCgGCGUCAgGau -5'
26860 3' -59.7 NC_005809.1 + 14286 0.67 0.33447
Target:  5'- uGCUGUCGGCGaUGCGGCC-CAcGUCg-- -3'
miRNA:   3'- -UGGUAGUCGC-ACGCCGGcGU-CAGgau -5'
26860 3' -59.7 NC_005809.1 + 39040 0.67 0.326388
Target:  5'- gACUGcgCGGUGUGCGGCUGUAuGUCUa- -3'
miRNA:   3'- -UGGUa-GUCGCACGCCGGCGU-CAGGau -5'
26860 3' -59.7 NC_005809.1 + 34852 0.67 0.310662
Target:  5'- gGCCGcCgAGCGUGC-GCUGCAGUUCa- -3'
miRNA:   3'- -UGGUaG-UCGCACGcCGGCGUCAGGau -5'
26860 3' -59.7 NC_005809.1 + 9728 0.68 0.283822
Target:  5'- gACCGUCuGCGgccaggcgaagccguUGCGGCUgguGUAGUCCg- -3'
miRNA:   3'- -UGGUAGuCGC---------------ACGCCGG---CGUCAGGau -5'
26860 3' -59.7 NC_005809.1 + 21740 0.68 0.280956
Target:  5'- cACCGUUGG-GcGCGGCCGC-GUCCa- -3'
miRNA:   3'- -UGGUAGUCgCaCGCCGGCGuCAGGau -5'
26860 3' -59.7 NC_005809.1 + 9664 0.68 0.266969
Target:  5'- aGCCGUgCAGgccGUGGCCGCAGUUCUu -3'
miRNA:   3'- -UGGUA-GUCgcaCGCCGGCGUCAGGAu -5'
26860 3' -59.7 NC_005809.1 + 26148 0.69 0.247052
Target:  5'- cGCCGcCGGCGauuaccccGCGGCCGU-GUCCUAc -3'
miRNA:   3'- -UGGUaGUCGCa-------CGCCGGCGuCAGGAU- -5'
26860 3' -59.7 NC_005809.1 + 41190 0.69 0.234468
Target:  5'- aACCGUUGuGCGcGUGGCCGCGGcgcCCUAu -3'
miRNA:   3'- -UGGUAGU-CGCaCGCCGGCGUCa--GGAU- -5'
26860 3' -59.7 NC_005809.1 + 7241 0.71 0.169894
Target:  5'- cACCcUCGGCGaUGuCGGCCGCccaGGUCUUGa -3'
miRNA:   3'- -UGGuAGUCGC-AC-GCCGGCG---UCAGGAU- -5'
26860 3' -59.7 NC_005809.1 + 26163 0.71 0.160816
Target:  5'- cGCCGUCuGCGaUGCGGUCGCAGauUUCg- -3'
miRNA:   3'- -UGGUAGuCGC-ACGCCGGCGUC--AGGau -5'
26860 3' -59.7 NC_005809.1 + 26430 1.06 0.000378
Target:  5'- cACCAUCAGCGUGCGGCCGCAGUCCUAc -3'
miRNA:   3'- -UGGUAGUCGCACGCCGGCGUCAGGAU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.