miRNA display CGI


Results 1 - 20 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26861 3' -54.5 NC_005809.1 + 26327 1.11 0.000588
Target:  5'- cCAACGCCAUCCGCCAUAUCGUGCCGCu -3'
miRNA:   3'- -GUUGCGGUAGGCGGUAUAGCACGGCG- -5'
26861 3' -54.5 NC_005809.1 + 16942 0.81 0.087792
Target:  5'- aCGGCGCCGUCCaGCag---CGUGCCGCg -3'
miRNA:   3'- -GUUGCGGUAGG-CGguauaGCACGGCG- -5'
26861 3' -54.5 NC_005809.1 + 33978 0.8 0.110754
Target:  5'- -uACGCCAUCCccacggucGCCGUgaccGUCGUGUCGCg -3'
miRNA:   3'- guUGCGGUAGG--------CGGUA----UAGCACGGCG- -5'
26861 3' -54.5 NC_005809.1 + 14026 0.77 0.16488
Target:  5'- gAugGCCGgcggCCGCaagGUCGUGCCGUu -3'
miRNA:   3'- gUugCGGUa---GGCGguaUAGCACGGCG- -5'
26861 3' -54.5 NC_005809.1 + 4391 0.77 0.169544
Target:  5'- aGGCGCCGUCgCGCCGggccuugagCGUGCgGCa -3'
miRNA:   3'- gUUGCGGUAG-GCGGUaua------GCACGgCG- -5'
26861 3' -54.5 NC_005809.1 + 5579 0.76 0.189397
Target:  5'- cCAACGCUggCCGCCAccgUGUCGaUGuCCGCc -3'
miRNA:   3'- -GUUGCGGuaGGCGGU---AUAGC-AC-GGCG- -5'
26861 3' -54.5 NC_005809.1 + 5806 0.76 0.19467
Target:  5'- gCAGCGCCAgcggauagUCgGgCAUggCGUGCCGCa -3'
miRNA:   3'- -GUUGCGGU--------AGgCgGUAuaGCACGGCG- -5'
26861 3' -54.5 NC_005809.1 + 17943 0.76 0.205603
Target:  5'- --cCGCCGgcaCGCCAUGUgguucaCGUGCCGCu -3'
miRNA:   3'- guuGCGGUag-GCGGUAUA------GCACGGCG- -5'
26861 3' -54.5 NC_005809.1 + 15844 0.74 0.248114
Target:  5'- -cACGCCGUCCGU---GUCGUGCUGg -3'
miRNA:   3'- guUGCGGUAGGCGguaUAGCACGGCg -5'
26861 3' -54.5 NC_005809.1 + 24164 0.74 0.261529
Target:  5'- aCAACGCCAccUUCGCCGa--CGUGgCCGCc -3'
miRNA:   3'- -GUUGCGGU--AGGCGGUauaGCAC-GGCG- -5'
26861 3' -54.5 NC_005809.1 + 13155 0.74 0.275528
Target:  5'- -uGCGCCucgauGUCgGCCAgUGUCG-GCCGCg -3'
miRNA:   3'- guUGCGG-----UAGgCGGU-AUAGCaCGGCG- -5'
26861 3' -54.5 NC_005809.1 + 32068 0.73 0.28275
Target:  5'- gCGACGCCAUgcucaucggccCCGCCAacaCG-GCCGCg -3'
miRNA:   3'- -GUUGCGGUA-----------GGCGGUauaGCaCGGCG- -5'
26861 3' -54.5 NC_005809.1 + 9101 0.73 0.320302
Target:  5'- gGugGCCGUgccggauUCGCCAgcgGUggcCGUGCCGCg -3'
miRNA:   3'- gUugCGGUA-------GGCGGUa--UA---GCACGGCG- -5'
26861 3' -54.5 NC_005809.1 + 9245 0.73 0.320302
Target:  5'- gGugGCCGUgccggauUCGCCAgcgGUggcCGUGCCGCg -3'
miRNA:   3'- gUugCGGUA-------GGCGGUa--UA---GCACGGCG- -5'
26861 3' -54.5 NC_005809.1 + 295 0.72 0.32841
Target:  5'- -uGCGCCGgaaggcgcgcucuUCCGuCCAgggCGUGCCGUa -3'
miRNA:   3'- guUGCGGU-------------AGGC-GGUauaGCACGGCG- -5'
26861 3' -54.5 NC_005809.1 + 42366 0.72 0.329229
Target:  5'- -uGCGCCAgUUCGCCGUGUCGcccgGCaGCg -3'
miRNA:   3'- guUGCGGU-AGGCGGUAUAGCa---CGgCG- -5'
26861 3' -54.5 NC_005809.1 + 13527 0.72 0.345928
Target:  5'- --uUGCCGUCCgcGCCGaacUGUCG-GCCGCc -3'
miRNA:   3'- guuGCGGUAGG--CGGU---AUAGCaCGGCG- -5'
26861 3' -54.5 NC_005809.1 + 16962 0.71 0.381112
Target:  5'- uGGCGCCGcgCCGCCGUgGUUGccacugccuggGCCGCa -3'
miRNA:   3'- gUUGCGGUa-GGCGGUA-UAGCa----------CGGCG- -5'
26861 3' -54.5 NC_005809.1 + 8663 0.71 0.390274
Target:  5'- -cGCGCgGUCgGCauug-CGUGCCGCg -3'
miRNA:   3'- guUGCGgUAGgCGguauaGCACGGCG- -5'
26861 3' -54.5 NC_005809.1 + 41945 0.71 0.399579
Target:  5'- uCGACGCCGgaCGCCGUGUCcacggcGCUGCu -3'
miRNA:   3'- -GUUGCGGUagGCGGUAUAGca----CGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.