miRNA display CGI


Results 21 - 40 of 106 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26861 3' -54.5 NC_005809.1 + 27828 0.66 0.688301
Target:  5'- -cGCGCUGcCCGCgGUggCGccgGCCGCg -3'
miRNA:   3'- guUGCGGUaGGCGgUAuaGCa--CGGCG- -5'
26861 3' -54.5 NC_005809.1 + 9341 0.66 0.687188
Target:  5'- gGugGCCGUgccggauUCGCCAgcgGUggcCGUGCCGg -3'
miRNA:   3'- gUugCGGUA-------GGCGGUa--UA---GCACGGCg -5'
26861 3' -54.5 NC_005809.1 + 9197 0.66 0.687188
Target:  5'- gGugGCCGUgccggauUCGCCAgcgGUggcCGUGCCGg -3'
miRNA:   3'- gUugCGGUA-------GGCGGUa--UA---GCACGGCg -5'
26861 3' -54.5 NC_005809.1 + 1687 0.66 0.683848
Target:  5'- -cGCGCagguagucgagaaAUUCGCCGUGggccggCGUGCCGg -3'
miRNA:   3'- guUGCGg------------UAGGCGGUAUa-----GCACGGCg -5'
26861 3' -54.5 NC_005809.1 + 27669 0.66 0.677153
Target:  5'- gGGCGCCAccUCCaCCGUGgucUUGgaauacagGCCGCg -3'
miRNA:   3'- gUUGCGGU--AGGcGGUAU---AGCa-------CGGCG- -5'
26861 3' -54.5 NC_005809.1 + 10316 0.66 0.677153
Target:  5'- aCuuCGCCAguUUCGCCAggcCGUaGCCGUc -3'
miRNA:   3'- -GuuGCGGU--AGGCGGUauaGCA-CGGCG- -5'
26861 3' -54.5 NC_005809.1 + 20250 0.66 0.677153
Target:  5'- uCGGCGCguUCggcacgGCCAgcagcAUCGUGCUGCc -3'
miRNA:   3'- -GUUGCGguAGg-----CGGUa----UAGCACGGCG- -5'
26861 3' -54.5 NC_005809.1 + 31497 0.66 0.677153
Target:  5'- uGACauaCCuugCCGCCGg--CGUGCUGCu -3'
miRNA:   3'- gUUGc--GGua-GGCGGUauaGCACGGCG- -5'
26861 3' -54.5 NC_005809.1 + 37898 0.66 0.677153
Target:  5'- -cGCGCUAUCCGgCGcgcUgGUGcCCGCa -3'
miRNA:   3'- guUGCGGUAGGCgGUau-AgCAC-GGCG- -5'
26861 3' -54.5 NC_005809.1 + 33394 0.66 0.677153
Target:  5'- cCAACGUCGacggCGCCAaguUGUCGcUGCCGg -3'
miRNA:   3'- -GUUGCGGUag--GCGGU---AUAGC-ACGGCg -5'
26861 3' -54.5 NC_005809.1 + 2094 0.66 0.676035
Target:  5'- uCGGC-CCAgguggUCGCCGUGUCGUcgguauagauugcGCCGUu -3'
miRNA:   3'- -GUUGcGGUa----GGCGGUAUAGCA-------------CGGCG- -5'
26861 3' -54.5 NC_005809.1 + 4098 0.66 0.676035
Target:  5'- -uGCGCCGugguguuUCCGCCAgccUGcGCUGCa -3'
miRNA:   3'- guUGCGGU-------AGGCGGUauaGCaCGGCG- -5'
26861 3' -54.5 NC_005809.1 + 17294 0.66 0.670442
Target:  5'- cCGGCGCCGcgggcgcgcauccauUCCGgCAUAUgG-GCCGg -3'
miRNA:   3'- -GUUGCGGU---------------AGGCgGUAUAgCaCGGCg -5'
26861 3' -54.5 NC_005809.1 + 15735 0.66 0.66596
Target:  5'- gCGAgGCCAUgCGCUcgAcauaccgcaccUCGuUGCCGCc -3'
miRNA:   3'- -GUUgCGGUAgGCGGuaU-----------AGC-ACGGCG- -5'
26861 3' -54.5 NC_005809.1 + 34570 0.66 0.66596
Target:  5'- uGGCGCCAagggcacgUCCgacGCCGUG--GUGCUGCu -3'
miRNA:   3'- gUUGCGGU--------AGG---CGGUAUagCACGGCG- -5'
26861 3' -54.5 NC_005809.1 + 4178 0.66 0.66596
Target:  5'- ---aGCCggCCGCCucgauggcgggcAUGUUG-GCCGCg -3'
miRNA:   3'- guugCGGuaGGCGG------------UAUAGCaCGGCG- -5'
26861 3' -54.5 NC_005809.1 + 16429 0.66 0.66596
Target:  5'- aCGGCgaGCCGcUgCGCCAaAUC-UGCCGCg -3'
miRNA:   3'- -GUUG--CGGU-AgGCGGUaUAGcACGGCG- -5'
26861 3' -54.5 NC_005809.1 + 24694 0.66 0.66596
Target:  5'- -cACGCCcaggcuGUCCaucgguGCCAgucgGUCGgGCCGCu -3'
miRNA:   3'- guUGCGG------UAGG------CGGUa---UAGCaCGGCG- -5'
26861 3' -54.5 NC_005809.1 + 26132 0.66 0.659228
Target:  5'- aCGACGCCGUguucaacgCCGCCGgcgauuaccccgCG-GCCGUg -3'
miRNA:   3'- -GUUGCGGUA--------GGCGGUaua---------GCaCGGCG- -5'
26861 3' -54.5 NC_005809.1 + 16796 0.66 0.654734
Target:  5'- -cGCGCgCAUCgCgGCCA--UCGuUGCCGCc -3'
miRNA:   3'- guUGCG-GUAG-G-CGGUauAGC-ACGGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.