Results 1 - 20 of 206 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26862 | 5' | -52.6 | NC_005809.1 | + | 13185 | 0.66 | 0.787708 |
Target: 5'- --cUGCUGGC-CUACCGcgcCGAGuCCGa -3' miRNA: 3'- gaaACGGCCGuGAUGGUu--GUUC-GGCg -5' |
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26862 | 5' | -52.6 | NC_005809.1 | + | 34937 | 0.66 | 0.787708 |
Target: 5'- ---aGCCGGCGugggu--CGAGCCGCg -3' miRNA: 3'- gaaaCGGCCGUgaugguuGUUCGGCG- -5' |
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26862 | 5' | -52.6 | NC_005809.1 | + | 27985 | 0.66 | 0.787708 |
Target: 5'- gCUggGCCaucaGGCugUaGCCGAUGAGgCGCu -3' miRNA: 3'- -GAaaCGG----CCGugA-UGGUUGUUCgGCG- -5' |
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26862 | 5' | -52.6 | NC_005809.1 | + | 13275 | 0.66 | 0.787708 |
Target: 5'- --gUGCUgGGCAaggGCCAGCAGuucGUCGCc -3' miRNA: 3'- gaaACGG-CCGUga-UGGUUGUU---CGGCG- -5' |
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26862 | 5' | -52.6 | NC_005809.1 | + | 21299 | 0.66 | 0.787708 |
Target: 5'- gCUggGCCGaCACUuacGCCGACAuGCUGg -3' miRNA: 3'- -GAaaCGGCcGUGA---UGGUUGUuCGGCg -5' |
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26862 | 5' | -52.6 | NC_005809.1 | + | 21956 | 0.66 | 0.787708 |
Target: 5'- ---aGCCGaCACcgACCuGCGAcGCCGCc -3' miRNA: 3'- gaaaCGGCcGUGa-UGGuUGUU-CGGCG- -5' |
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26862 | 5' | -52.6 | NC_005809.1 | + | 4667 | 0.66 | 0.787708 |
Target: 5'- -gUUGuuGGCggGC-ACCAGCGcGCCGg -3' miRNA: 3'- gaAACggCCG--UGaUGGUUGUuCGGCg -5' |
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26862 | 5' | -52.6 | NC_005809.1 | + | 20254 | 0.66 | 0.777338 |
Target: 5'- ---cGCguuCGGCACgGCCAGCAGcaucguGCUGCc -3' miRNA: 3'- gaaaCG---GCCGUGaUGGUUGUU------CGGCG- -5' |
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26862 | 5' | -52.6 | NC_005809.1 | + | 33909 | 0.66 | 0.777338 |
Target: 5'- ---cGCgCGGCACgcaaUGCCGACcgccgaugaAGGCCGg -3' miRNA: 3'- gaaaCG-GCCGUG----AUGGUUG---------UUCGGCg -5' |
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26862 | 5' | -52.6 | NC_005809.1 | + | 14820 | 0.66 | 0.777338 |
Target: 5'- ---aGCCGG-ACgagGgCAGCGAGuuGCg -3' miRNA: 3'- gaaaCGGCCgUGa--UgGUUGUUCggCG- -5' |
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26862 | 5' | -52.6 | NC_005809.1 | + | 9664 | 0.66 | 0.777338 |
Target: 5'- ---aGCCGuGCAg-GCCGu--GGCCGCa -3' miRNA: 3'- gaaaCGGC-CGUgaUGGUuguUCGGCG- -5' |
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26862 | 5' | -52.6 | NC_005809.1 | + | 42055 | 0.66 | 0.777338 |
Target: 5'- ---gGCCGaaCAgaACCGccuGCAAGCCGCc -3' miRNA: 3'- gaaaCGGCc-GUgaUGGU---UGUUCGGCG- -5' |
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26862 | 5' | -52.6 | NC_005809.1 | + | 33886 | 0.66 | 0.777338 |
Target: 5'- --cUGCgCGGCGCacaccugggcgGCgCAGC-AGCCGCu -3' miRNA: 3'- gaaACG-GCCGUGa----------UG-GUUGuUCGGCG- -5' |
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26862 | 5' | -52.6 | NC_005809.1 | + | 24111 | 0.66 | 0.777338 |
Target: 5'- ---gGCCGaCGCcGCCGGC--GCCGCg -3' miRNA: 3'- gaaaCGGCcGUGaUGGUUGuuCGGCG- -5' |
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26862 | 5' | -52.6 | NC_005809.1 | + | 23183 | 0.66 | 0.777338 |
Target: 5'- --cUGCUGGUGCgacAgCAGCAGGUCGg -3' miRNA: 3'- gaaACGGCCGUGa--UgGUUGUUCGGCg -5' |
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26862 | 5' | -52.6 | NC_005809.1 | + | 9060 | 0.66 | 0.766804 |
Target: 5'- --nUGCCGuaAUUGCCAGCGguGGCCn- -3' miRNA: 3'- gaaACGGCcgUGAUGGUUGU--UCGGcg -5' |
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26862 | 5' | -52.6 | NC_005809.1 | + | 37940 | 0.66 | 0.766804 |
Target: 5'- -cUUGCCGacccugcggcaGCGCggGCCAACAuuGGCCugGCu -3' miRNA: 3'- gaAACGGC-----------CGUGa-UGGUUGU--UCGG--CG- -5' |
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26862 | 5' | -52.6 | NC_005809.1 | + | 13922 | 0.66 | 0.766804 |
Target: 5'- ---cGCCGGCACcgauCUGGCAcuGCgCGCg -3' miRNA: 3'- gaaaCGGCCGUGau--GGUUGUu-CG-GCG- -5' |
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26862 | 5' | -52.6 | NC_005809.1 | + | 4695 | 0.66 | 0.766804 |
Target: 5'- ---aGCgCGGCGagaaugGCCGGCAAGuuGUu -3' miRNA: 3'- gaaaCG-GCCGUga----UGGUUGUUCggCG- -5' |
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26862 | 5' | -52.6 | NC_005809.1 | + | 9319 | 0.66 | 0.766804 |
Target: 5'- --cUGgCGGCGCacgucgGCgCGGCGGGCgGCg -3' miRNA: 3'- gaaACgGCCGUGa-----UG-GUUGUUCGgCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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