miRNA display CGI


Results 1 - 20 of 206 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26862 5' -52.6 NC_005809.1 + 33886 0.66 0.777338
Target:  5'- --cUGCgCGGCGCacaccugggcgGCgCAGC-AGCCGCu -3'
miRNA:   3'- gaaACG-GCCGUGa----------UG-GUUGuUCGGCG- -5'
26862 5' -52.6 NC_005809.1 + 39710 0.66 0.756119
Target:  5'- -cUUGCaUGGCuCUGCCAACGcuacGGCUugGCg -3'
miRNA:   3'- gaAACG-GCCGuGAUGGUUGU----UCGG--CG- -5'
26862 5' -52.6 NC_005809.1 + 9319 0.66 0.766804
Target:  5'- --cUGgCGGCGCacgucgGCgCGGCGGGCgGCg -3'
miRNA:   3'- gaaACgGCCGUGa-----UG-GUUGUUCGgCG- -5'
26862 5' -52.6 NC_005809.1 + 4667 0.66 0.787708
Target:  5'- -gUUGuuGGCggGC-ACCAGCGcGCCGg -3'
miRNA:   3'- gaAACggCCG--UGaUGGUUGUuCGGCg -5'
26862 5' -52.6 NC_005809.1 + 525 0.66 0.756119
Target:  5'- ---cGCUGGCcgaaUACCucggacgugcGCGGGCCGCu -3'
miRNA:   3'- gaaaCGGCCGug--AUGGu---------UGUUCGGCG- -5'
26862 5' -52.6 NC_005809.1 + 4695 0.66 0.766804
Target:  5'- ---aGCgCGGCGagaaugGCCGGCAAGuuGUu -3'
miRNA:   3'- gaaaCG-GCCGUga----UGGUUGUUCggCG- -5'
26862 5' -52.6 NC_005809.1 + 15074 0.66 0.745295
Target:  5'- ---aGCUGGCG--GCCGA--GGCCGCc -3'
miRNA:   3'- gaaaCGGCCGUgaUGGUUguUCGGCG- -5'
26862 5' -52.6 NC_005809.1 + 10499 0.66 0.745295
Target:  5'- --gUGuuGGCGggGCCGAUGAGCaugGCg -3'
miRNA:   3'- gaaACggCCGUgaUGGUUGUUCGg--CG- -5'
26862 5' -52.6 NC_005809.1 + 22301 0.66 0.745295
Target:  5'- --gUGCgGGCAacgacgGCCAACAgcagcaacAGCCGa -3'
miRNA:   3'- gaaACGgCCGUga----UGGUUGU--------UCGGCg -5'
26862 5' -52.6 NC_005809.1 + 15913 0.66 0.756119
Target:  5'- -cUUGCCGcUGCUGCUgaugaaccacacGAUAGGCUGCg -3'
miRNA:   3'- gaAACGGCcGUGAUGG------------UUGUUCGGCG- -5'
26862 5' -52.6 NC_005809.1 + 29278 0.66 0.756119
Target:  5'- ---cGCCGGCc---CCGGCGcGCUGCa -3'
miRNA:   3'- gaaaCGGCCGugauGGUUGUuCGGCG- -5'
26862 5' -52.6 NC_005809.1 + 19566 0.66 0.745295
Target:  5'- ---aGCaGGCGC-AgCAGCAGGCCGa -3'
miRNA:   3'- gaaaCGgCCGUGaUgGUUGUUCGGCg -5'
26862 5' -52.6 NC_005809.1 + 24528 0.66 0.763614
Target:  5'- ---cGCCGGUaaggcccccaagcaGCccGCCGACAAGaacCCGCa -3'
miRNA:   3'- gaaaCGGCCG--------------UGa-UGGUUGUUC---GGCG- -5'
26862 5' -52.6 NC_005809.1 + 27985 0.66 0.787708
Target:  5'- gCUggGCCaucaGGCugUaGCCGAUGAGgCGCu -3'
miRNA:   3'- -GAaaCGG----CCGugA-UGGUUGUUCgGCG- -5'
26862 5' -52.6 NC_005809.1 + 13275 0.66 0.787708
Target:  5'- --gUGCUgGGCAaggGCCAGCAGuucGUCGCc -3'
miRNA:   3'- gaaACGG-CCGUga-UGGUUGUU---CGGCG- -5'
26862 5' -52.6 NC_005809.1 + 27247 0.66 0.752886
Target:  5'- ---aGCCGGCGCcccaggcucuugGCCGagGCAAugaaccgcaguucGCCGCg -3'
miRNA:   3'- gaaaCGGCCGUGa-----------UGGU--UGUU-------------CGGCG- -5'
26862 5' -52.6 NC_005809.1 + 23183 0.66 0.777338
Target:  5'- --cUGCUGGUGCgacAgCAGCAGGUCGg -3'
miRNA:   3'- gaaACGGCCGUGa--UgGUUGUUCGGCg -5'
26862 5' -52.6 NC_005809.1 + 23691 0.66 0.744206
Target:  5'- ---gGCCGGaCACguacagGCCGGuagcgccCAGGUCGCg -3'
miRNA:   3'- gaaaCGGCC-GUGa-----UGGUU-------GUUCGGCG- -5'
26862 5' -52.6 NC_005809.1 + 1181 0.66 0.755043
Target:  5'- ---aGCCGuaucGCGCUGCCGugAAuuucuacGCCGUc -3'
miRNA:   3'- gaaaCGGC----CGUGAUGGUugUU-------CGGCG- -5'
26862 5' -52.6 NC_005809.1 + 17278 0.66 0.766804
Target:  5'- -aUUGCCGucCACgaaGCCGGC--GCCGCg -3'
miRNA:   3'- gaAACGGCc-GUGa--UGGUUGuuCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.