miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26863 3' -56.2 NC_005809.1 + 26052 1.11 0.000402
Target:  5'- cGGCUAUAUCGGCCAGACCACCGGCACc -3'
miRNA:   3'- -CCGAUAUAGCCGGUCUGGUGGCCGUG- -5'
26863 3' -56.2 NC_005809.1 + 15074 0.83 0.04921
Target:  5'- aGCUGg--CGGCCgAGGCCGCCGGCAUc -3'
miRNA:   3'- cCGAUauaGCCGG-UCUGGUGGCCGUG- -5'
26863 3' -56.2 NC_005809.1 + 25300 0.8 0.074316
Target:  5'- aGGUcGUG-CGGCCGGcccuGCCACCGGCGCu -3'
miRNA:   3'- -CCGaUAUaGCCGGUC----UGGUGGCCGUG- -5'
26863 3' -56.2 NC_005809.1 + 13211 0.79 0.085974
Target:  5'- gGGCUGg---GGCaAGGCCACCGGCGCg -3'
miRNA:   3'- -CCGAUauagCCGgUCUGGUGGCCGUG- -5'
26863 3' -56.2 NC_005809.1 + 33595 0.78 0.099359
Target:  5'- uGGCUAUcgCGGCaCGGccACCGCUGGCAa -3'
miRNA:   3'- -CCGAUAuaGCCG-GUC--UGGUGGCCGUg -5'
26863 3' -56.2 NC_005809.1 + 33451 0.77 0.121428
Target:  5'- uGGCUAUcgCGGCaCGGccACCGCUGGCGa -3'
miRNA:   3'- -CCGAUAuaGCCG-GUC--UGGUGGCCGUg -5'
26863 3' -56.2 NC_005809.1 + 33307 0.77 0.121428
Target:  5'- uGGCUAUcgCGGCaCGGccACCGCUGGCGa -3'
miRNA:   3'- -CCGAUAuaGCCG-GUC--UGGUGGCCGUg -5'
26863 3' -56.2 NC_005809.1 + 32529 0.77 0.12493
Target:  5'- aGGCUGgugAUgcCGGCCAGgaugcuGCCGCCGGCGa -3'
miRNA:   3'- -CCGAUa--UA--GCCGGUC------UGGUGGCCGUg -5'
26863 3' -56.2 NC_005809.1 + 13900 0.76 0.146331
Target:  5'- uGGCgcgccgcgcUGGCgAGGCCGCCGGCACc -3'
miRNA:   3'- -CCGauaua----GCCGgUCUGGUGGCCGUG- -5'
26863 3' -56.2 NC_005809.1 + 17852 0.76 0.147981
Target:  5'- aGGCgcgGUGgaagCGGCCcGACCgACUGGCACc -3'
miRNA:   3'- -CCGa--UAUa---GCCGGuCUGG-UGGCCGUG- -5'
26863 3' -56.2 NC_005809.1 + 24098 0.76 0.147981
Target:  5'- cGGUggacgaAUCGGCCGacGCCGCCGGCGCc -3'
miRNA:   3'- -CCGaua---UAGCCGGUc-UGGUGGCCGUG- -5'
26863 3' -56.2 NC_005809.1 + 19023 0.76 0.151757
Target:  5'- cGGCgAUGUCGGCCgAGGCCAUCGaccgcguGCGCc -3'
miRNA:   3'- -CCGaUAUAGCCGG-UCUGGUGGC-------CGUG- -5'
26863 3' -56.2 NC_005809.1 + 29024 0.75 0.169613
Target:  5'- aGGCgccgcgcuUCGGCCAGGucgauacCCACCGGCGg -3'
miRNA:   3'- -CCGauau----AGCCGGUCU-------GGUGGCCGUg -5'
26863 3' -56.2 NC_005809.1 + 23081 0.75 0.179722
Target:  5'- cGGUUcgcagCGGCCuGcCCACCGGCACc -3'
miRNA:   3'- -CCGAuaua-GCCGGuCuGGUGGCCGUG- -5'
26863 3' -56.2 NC_005809.1 + 19746 0.74 0.211024
Target:  5'- cGGCU--GUCGGCagcgcggcgaaguCGGGCCAguCCGGCACc -3'
miRNA:   3'- -CCGAuaUAGCCG-------------GUCUGGU--GGCCGUG- -5'
26863 3' -56.2 NC_005809.1 + 32150 0.74 0.213882
Target:  5'- aGCUGUuggaaaugaaaagUGGCgAGGCCAUCGGCGCg -3'
miRNA:   3'- cCGAUAua-----------GCCGgUCUGGUGGCCGUG- -5'
26863 3' -56.2 NC_005809.1 + 40802 0.73 0.229284
Target:  5'- ---cGUAUCGGCCcGACgCGCCaGGCGCa -3'
miRNA:   3'- ccgaUAUAGCCGGuCUG-GUGG-CCGUG- -5'
26863 3' -56.2 NC_005809.1 + 14416 0.73 0.241761
Target:  5'- cGGCgugGUCGaUCuGACCACCGGCAa -3'
miRNA:   3'- -CCGauaUAGCcGGuCUGGUGGCCGUg -5'
26863 3' -56.2 NC_005809.1 + 24043 0.73 0.241761
Target:  5'- ------uUCGGCCAGGCCaaucccaacACCGGCAUg -3'
miRNA:   3'- ccgauauAGCCGGUCUGG---------UGGCCGUG- -5'
26863 3' -56.2 NC_005809.1 + 28564 0.72 0.261531
Target:  5'- cGGCcAUcgCGGCgCGcacgucGGCCACCGGCAg -3'
miRNA:   3'- -CCGaUAuaGCCG-GU------CUGGUGGCCGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.