miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26863 3' -56.2 NC_005809.1 + 449 0.7 0.362417
Target:  5'- gGGCUGcugcgCGGCCAG-CUugCgGGCGCu -3'
miRNA:   3'- -CCGAUaua--GCCGGUCuGGugG-CCGUG- -5'
26863 3' -56.2 NC_005809.1 + 609 0.66 0.551473
Target:  5'- uGCgg-GUCGGCCAGcAgCGCCGuGgACa -3'
miRNA:   3'- cCGauaUAGCCGGUC-UgGUGGC-CgUG- -5'
26863 3' -56.2 NC_005809.1 + 664 0.7 0.336914
Target:  5'- aGGCUGUAgccaCCAGGCCGCCuacggcGGCGCc -3'
miRNA:   3'- -CCGAUAUagccGGUCUGGUGG------CCGUG- -5'
26863 3' -56.2 NC_005809.1 + 2223 0.7 0.362417
Target:  5'- cGCUccAUGUCGcgguauaaacGCCGGGCCuugGCCGGCAg -3'
miRNA:   3'- cCGA--UAUAGC----------CGGUCUGG---UGGCCGUg -5'
26863 3' -56.2 NC_005809.1 + 2827 0.66 0.551473
Target:  5'- aGGUgcUcgCGGCCAcGCgCAgCGGCGCc -3'
miRNA:   3'- -CCGauAuaGCCGGUcUG-GUgGCCGUG- -5'
26863 3' -56.2 NC_005809.1 + 4197 0.66 0.551473
Target:  5'- gGGC-AUGUUGGCCGcgagcacgucgcGGCUugCGGCuuGCg -3'
miRNA:   3'- -CCGaUAUAGCCGGU------------CUGGugGCCG--UG- -5'
26863 3' -56.2 NC_005809.1 + 4342 0.7 0.333614
Target:  5'- gGGCUGggguagcagaggaAUCGGCCGGACgGCaGGCGg -3'
miRNA:   3'- -CCGAUa------------UAGCCGGUCUGgUGgCCGUg -5'
26863 3' -56.2 NC_005809.1 + 5087 0.68 0.446591
Target:  5'- cGGUUGgaacaggCGGCCGGcCCAgcguCCGGUGCg -3'
miRNA:   3'- -CCGAUaua----GCCGGUCuGGU----GGCCGUG- -5'
26863 3' -56.2 NC_005809.1 + 5289 0.66 0.605658
Target:  5'- cGGCguUGUCGGCCAcggcgucGAuauuuuccaggUCGCCGGcCACg -3'
miRNA:   3'- -CCGauAUAGCCGGU-------CU-----------GGUGGCC-GUG- -5'
26863 3' -56.2 NC_005809.1 + 6381 0.66 0.551473
Target:  5'- cGGCa--AUCaGGCgCAGGCCGgCCGGCcCg -3'
miRNA:   3'- -CCGauaUAG-CCG-GUCUGGU-GGCCGuG- -5'
26863 3' -56.2 NC_005809.1 + 7148 0.68 0.466734
Target:  5'- cGGCUG---CGGCCuggauGACCaggGCCgGGCGCu -3'
miRNA:   3'- -CCGAUauaGCCGGu----CUGG---UGG-CCGUG- -5'
26863 3' -56.2 NC_005809.1 + 8278 0.67 0.50836
Target:  5'- cGGCUuccagGGCCAcGCUGCCGGgGCa -3'
miRNA:   3'- -CCGAuauagCCGGUcUGGUGGCCgUG- -5'
26863 3' -56.2 NC_005809.1 + 8397 0.69 0.38923
Target:  5'- uGGCUGcguagccaGUCGGCCAGG--GCCGuGCGCu -3'
miRNA:   3'- -CCGAUa-------UAGCCGGUCUggUGGC-CGUG- -5'
26863 3' -56.2 NC_005809.1 + 9539 0.67 0.529756
Target:  5'- cGGCccuguUCGGCCAGugCgaucugcucGCCGGUg- -3'
miRNA:   3'- -CCGauau-AGCCGGUCugG---------UGGCCGug -5'
26863 3' -56.2 NC_005809.1 + 10100 0.66 0.573453
Target:  5'- gGGCgc-AUCGGCCGcccCCACCucGGCAg -3'
miRNA:   3'- -CCGauaUAGCCGGUcu-GGUGG--CCGUg -5'
26863 3' -56.2 NC_005809.1 + 10203 0.66 0.573453
Target:  5'- uGCUGgg-CGGCCgGGGCC-UCGGCGg -3'
miRNA:   3'- cCGAUauaGCCGG-UCUGGuGGCCGUg -5'
26863 3' -56.2 NC_005809.1 + 10494 0.67 0.497799
Target:  5'- cGGCcGUGUUGGCgGGGCCGauGaGCAUg -3'
miRNA:   3'- -CCGaUAUAGCCGgUCUGGUggC-CGUG- -5'
26863 3' -56.2 NC_005809.1 + 11139 0.67 0.539492
Target:  5'- aGCagu-UCGGCCugcugcuGGGCCGCCuGCGCa -3'
miRNA:   3'- cCGauauAGCCGG-------UCUGGUGGcCGUG- -5'
26863 3' -56.2 NC_005809.1 + 11997 0.66 0.594519
Target:  5'- uGGCcuuuuccacGUCGGCCAGcagcgcgGCCgugGCCGGCGa -3'
miRNA:   3'- -CCGaua------UAGCCGGUC-------UGG---UGGCCGUg -5'
26863 3' -56.2 NC_005809.1 + 12712 0.66 0.606773
Target:  5'- uGGCUGUucaaGUCGcCCGGcCCGuuGGUGCu -3'
miRNA:   3'- -CCGAUA----UAGCcGGUCuGGUggCCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.