Results 1 - 20 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26863 | 5' | -53.7 | NC_005809.1 | + | 12976 | 0.66 | 0.769169 |
Target: 5'- nGGACaacuGGCAAaccgcgcgccUGggCGCGgCCGACCUGa -3' miRNA: 3'- -CCUG----CUGUU----------AUa-GCGCgGGCUGGACa -5' |
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26863 | 5' | -53.7 | NC_005809.1 | + | 28930 | 0.66 | 0.769169 |
Target: 5'- aGGACaugGACGg---CGCGCCgGACUUGc -3' miRNA: 3'- -CCUG---CUGUuauaGCGCGGgCUGGACa -5' |
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26863 | 5' | -53.7 | NC_005809.1 | + | 17998 | 0.66 | 0.758761 |
Target: 5'- cGGACGGCccgacCGUGgCCGGCCUc- -3' miRNA: 3'- -CCUGCUGuuauaGCGCgGGCUGGAca -5' |
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26863 | 5' | -53.7 | NC_005809.1 | + | 9707 | 0.66 | 0.758761 |
Target: 5'- gGGcGCGACAAUcUCG-GCgCCGACCg-- -3' miRNA: 3'- -CC-UGCUGUUAuAGCgCG-GGCUGGaca -5' |
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26863 | 5' | -53.7 | NC_005809.1 | + | 2322 | 0.66 | 0.748218 |
Target: 5'- -aGCGACAGgcacagAUCGCGCagccuguccUCGAUCUGUu -3' miRNA: 3'- ccUGCUGUUa-----UAGCGCG---------GGCUGGACA- -5' |
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26863 | 5' | -53.7 | NC_005809.1 | + | 15162 | 0.66 | 0.748218 |
Target: 5'- aGGGCGACGgcugAUGUUGCuCCUGACaUGg -3' miRNA: 3'- -CCUGCUGU----UAUAGCGcGGGCUGgACa -5' |
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26863 | 5' | -53.7 | NC_005809.1 | + | 36174 | 0.66 | 0.737552 |
Target: 5'- cGACGACAucaccgAggGCGCcgcggcggCCGACCUGg -3' miRNA: 3'- cCUGCUGUua----UagCGCG--------GGCUGGACa -5' |
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26863 | 5' | -53.7 | NC_005809.1 | + | 14913 | 0.66 | 0.726776 |
Target: 5'- cGGugGAg---GUgGCGCCC-ACCUGg -3' miRNA: 3'- -CCugCUguuaUAgCGCGGGcUGGACa -5' |
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26863 | 5' | -53.7 | NC_005809.1 | + | 18871 | 0.66 | 0.726776 |
Target: 5'- -cGCGACcugggCGCuaCCGGCCUGUa -3' miRNA: 3'- ccUGCUGuuauaGCGcgGGCUGGACA- -5' |
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26863 | 5' | -53.7 | NC_005809.1 | + | 31130 | 0.66 | 0.725693 |
Target: 5'- --cUGcCGGUGUCGCGCCuuaucggCGACCUGc -3' miRNA: 3'- ccuGCuGUUAUAGCGCGG-------GCUGGACa -5' |
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26863 | 5' | -53.7 | NC_005809.1 | + | 28774 | 0.67 | 0.715901 |
Target: 5'- cGGcGCGcACGGcGUCGCGCuuGcCCUGg -3' miRNA: 3'- -CC-UGC-UGUUaUAGCGCGggCuGGACa -5' |
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26863 | 5' | -53.7 | NC_005809.1 | + | 37651 | 0.67 | 0.70494 |
Target: 5'- cGAgGGCAAgaagcugGUCGuCG-CCGACCUGUc -3' miRNA: 3'- cCUgCUGUUa------UAGC-GCgGGCUGGACA- -5' |
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26863 | 5' | -53.7 | NC_005809.1 | + | 18990 | 0.67 | 0.693906 |
Target: 5'- uGACGGCcAUcGUCGCcccccGCCCGcACCUGc -3' miRNA: 3'- cCUGCUGuUA-UAGCG-----CGGGC-UGGACa -5' |
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26863 | 5' | -53.7 | NC_005809.1 | + | 24334 | 0.67 | 0.693906 |
Target: 5'- aGGCGGCAGag-CGaUGCCCGugUUGUu -3' miRNA: 3'- cCUGCUGUUauaGC-GCGGGCugGACA- -5' |
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26863 | 5' | -53.7 | NC_005809.1 | + | 18663 | 0.67 | 0.693906 |
Target: 5'- gGGGCGGuCGcc--CGCcCCCGGCCUGUu -3' miRNA: 3'- -CCUGCU-GUuauaGCGcGGGCUGGACA- -5' |
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26863 | 5' | -53.7 | NC_005809.1 | + | 8184 | 0.67 | 0.682808 |
Target: 5'- cGGAugcugcCGGCGAUuucAUCGCGCaCGGCCUcGUa -3' miRNA: 3'- -CCU------GCUGUUA---UAGCGCGgGCUGGA-CA- -5' |
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26863 | 5' | -53.7 | NC_005809.1 | + | 8574 | 0.67 | 0.671661 |
Target: 5'- uGGGCGuCGuaggccgCGCGUgCGGCCUGg -3' miRNA: 3'- -CCUGCuGUuaua---GCGCGgGCUGGACa -5' |
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26863 | 5' | -53.7 | NC_005809.1 | + | 10000 | 0.68 | 0.63803 |
Target: 5'- gGGuCGAaAGUGccgCGCGCCCGGCCc-- -3' miRNA: 3'- -CCuGCUgUUAUa--GCGCGGGCUGGaca -5' |
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26863 | 5' | -53.7 | NC_005809.1 | + | 33826 | 0.68 | 0.63803 |
Target: 5'- cGGcACGugAAUA-CGCGCgCGcCCUGg -3' miRNA: 3'- -CC-UGCugUUAUaGCGCGgGCuGGACa -5' |
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26863 | 5' | -53.7 | NC_005809.1 | + | 17564 | 0.68 | 0.615564 |
Target: 5'- cGGACGGCAAcccgcUGUCGUcgGCCCccuuuGugCUGg -3' miRNA: 3'- -CCUGCUGUU-----AUAGCG--CGGG-----CugGACa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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