miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26863 5' -53.7 NC_005809.1 + 13465 0.74 0.302134
Target:  5'- cGGGCG-CGGUGUCGgGCauGACCUGg -3'
miRNA:   3'- -CCUGCuGUUAUAGCgCGggCUGGACa -5'
26863 5' -53.7 NC_005809.1 + 15162 0.66 0.748218
Target:  5'- aGGGCGACGgcugAUGUUGCuCCUGACaUGg -3'
miRNA:   3'- -CCUGCUGU----UAUAGCGcGGGCUGgACa -5'
26863 5' -53.7 NC_005809.1 + 36174 0.66 0.737552
Target:  5'- cGACGACAucaccgAggGCGCcgcggcggCCGACCUGg -3'
miRNA:   3'- cCUGCUGUua----UagCGCG--------GGCUGGACa -5'
26863 5' -53.7 NC_005809.1 + 28774 0.67 0.715901
Target:  5'- cGGcGCGcACGGcGUCGCGCuuGcCCUGg -3'
miRNA:   3'- -CC-UGC-UGUUaUAGCGCGggCuGGACa -5'
26863 5' -53.7 NC_005809.1 + 37651 0.67 0.70494
Target:  5'- cGAgGGCAAgaagcugGUCGuCG-CCGACCUGUc -3'
miRNA:   3'- cCUgCUGUUa------UAGC-GCgGGCUGGACA- -5'
26863 5' -53.7 NC_005809.1 + 18663 0.67 0.693906
Target:  5'- gGGGCGGuCGcc--CGCcCCCGGCCUGUu -3'
miRNA:   3'- -CCUGCU-GUuauaGCGcGGGCUGGACA- -5'
26863 5' -53.7 NC_005809.1 + 24334 0.67 0.693906
Target:  5'- aGGCGGCAGag-CGaUGCCCGugUUGUu -3'
miRNA:   3'- cCUGCUGUUauaGC-GCGGGCugGACA- -5'
26863 5' -53.7 NC_005809.1 + 8184 0.67 0.682808
Target:  5'- cGGAugcugcCGGCGAUuucAUCGCGCaCGGCCUcGUa -3'
miRNA:   3'- -CCU------GCUGUUA---UAGCGCGgGCUGGA-CA- -5'
26863 5' -53.7 NC_005809.1 + 8574 0.67 0.671661
Target:  5'- uGGGCGuCGuaggccgCGCGUgCGGCCUGg -3'
miRNA:   3'- -CCUGCuGUuaua---GCGCGgGCUGGACa -5'
26863 5' -53.7 NC_005809.1 + 10000 0.68 0.63803
Target:  5'- gGGuCGAaAGUGccgCGCGCCCGGCCc-- -3'
miRNA:   3'- -CCuGCUgUUAUa--GCGCGGGCUGGaca -5'
26863 5' -53.7 NC_005809.1 + 1112 0.68 0.615564
Target:  5'- -cGCGGC-AUGUCGCGCaUCGGCCcgGUg -3'
miRNA:   3'- ccUGCUGuUAUAGCGCG-GGCUGGa-CA- -5'
26863 5' -53.7 NC_005809.1 + 32870 0.74 0.302134
Target:  5'- cGGCGcCGAgauUGUCGCGCCCGACUg-- -3'
miRNA:   3'- cCUGCuGUU---AUAGCGCGGGCUGGaca -5'
26863 5' -53.7 NC_005809.1 + 41785 0.73 0.368272
Target:  5'- uGACGGCGAUugCGCagcgGCCCGAUCUGa -3'
miRNA:   3'- cCUGCUGUUAuaGCG----CGGGCUGGACa -5'
26863 5' -53.7 NC_005809.1 + 30988 0.72 0.414376
Target:  5'- cGGugGACGAUcugcUCaCGCgCGACCUGUc -3'
miRNA:   3'- -CCugCUGUUAu---AGcGCGgGCUGGACA- -5'
26863 5' -53.7 NC_005809.1 + 24659 0.7 0.527036
Target:  5'- aGGAUGGuguUGUCGCGCCCG-CCg-- -3'
miRNA:   3'- -CCUGCUguuAUAGCGCGGGCuGGaca -5'
26863 5' -53.7 NC_005809.1 + 39993 0.69 0.548825
Target:  5'- aGGGCGGCAAgcgcgcgcaCGCGCUgGGCCgUGUc -3'
miRNA:   3'- -CCUGCUGUUaua------GCGCGGgCUGG-ACA- -5'
26863 5' -53.7 NC_005809.1 + 16258 0.69 0.570887
Target:  5'- cGGAUGGCGuUGgccUCGCGCgCGGCCa-- -3'
miRNA:   3'- -CCUGCUGUuAU---AGCGCGgGCUGGaca -5'
26863 5' -53.7 NC_005809.1 + 21461 0.69 0.593157
Target:  5'- gGGGCGGCAggAUGUUG-GCCuCGACCa-- -3'
miRNA:   3'- -CCUGCUGU--UAUAGCgCGG-GCUGGaca -5'
26863 5' -53.7 NC_005809.1 + 28930 0.66 0.769169
Target:  5'- aGGACaugGACGg---CGCGCCgGACUUGc -3'
miRNA:   3'- -CCUG---CUGUuauaGCGCGGgCUGGACa -5'
26863 5' -53.7 NC_005809.1 + 13363 0.78 0.177403
Target:  5'- uGGACGcCAugcgCGCGUCCGACCUGc -3'
miRNA:   3'- -CCUGCuGUuauaGCGCGGGCUGGACa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.