Results 1 - 20 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26864 | 3' | -51.4 | NC_005809.1 | + | 22565 | 0.66 | 0.88935 |
Target: 5'- --aGGCgCGCCAUGcCGAGCAaguugGCGAGu -3' miRNA: 3'- gcaCUG-GCGGUGCaGCUUGU-----UGUUCc -5' |
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26864 | 3' | -51.4 | NC_005809.1 | + | 31819 | 0.66 | 0.887088 |
Target: 5'- gCG-GGCCGaagucgagcgcgccCUugG-CGAGCAGCAAGGc -3' miRNA: 3'- -GCaCUGGC--------------GGugCaGCUUGUUGUUCC- -5' |
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26864 | 3' | -51.4 | NC_005809.1 | + | 7583 | 0.66 | 0.881713 |
Target: 5'- aGUaGCCGCCGCGUaGggU--CAGGGu -3' miRNA: 3'- gCAcUGGCGGUGCAgCuuGuuGUUCC- -5' |
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26864 | 3' | -51.4 | NC_005809.1 | + | 6740 | 0.66 | 0.881713 |
Target: 5'- --gGGCCGCCGCGcUC-AAUAGCGgaaAGGu -3' miRNA: 3'- gcaCUGGCGGUGC-AGcUUGUUGU---UCC- -5' |
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26864 | 3' | -51.4 | NC_005809.1 | + | 38995 | 0.66 | 0.881713 |
Target: 5'- aCGUGAcCCGgCGCGUCGcugaaauuuauGCGGCGcGGu -3' miRNA: 3'- -GCACU-GGCgGUGCAGCu----------UGUUGUuCC- -5' |
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26864 | 3' | -51.4 | NC_005809.1 | + | 13256 | 0.66 | 0.873805 |
Target: 5'- --cGACCGCCACcgccUUGAaguGCuggGCAAGGg -3' miRNA: 3'- gcaCUGGCGGUGc---AGCU---UGu--UGUUCC- -5' |
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26864 | 3' | -51.4 | NC_005809.1 | + | 37001 | 0.66 | 0.873805 |
Target: 5'- gGUGGCgGCCAgcguuggcgcCGUCGAuaccguggcggGCGACcuGGg -3' miRNA: 3'- gCACUGgCGGU----------GCAGCU-----------UGUUGuuCC- -5' |
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26864 | 3' | -51.4 | NC_005809.1 | + | 19476 | 0.66 | 0.873805 |
Target: 5'- cCGUGGgCGCCGCcGUUG-GCGuCGGGGc -3' miRNA: 3'- -GCACUgGCGGUG-CAGCuUGUuGUUCC- -5' |
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26864 | 3' | -51.4 | NC_005809.1 | + | 1587 | 0.66 | 0.873 |
Target: 5'- aGUGGCCGCCGCcuuccuggugGUCGAguGCGuugguuuGCGuGGu -3' miRNA: 3'- gCACUGGCGGUG----------CAGCU--UGU-------UGUuCC- -5' |
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26864 | 3' | -51.4 | NC_005809.1 | + | 19390 | 0.66 | 0.865633 |
Target: 5'- --cGACCuGCUGCuGUCGcacCAGCAGGGg -3' miRNA: 3'- gcaCUGG-CGGUG-CAGCuu-GUUGUUCC- -5' |
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26864 | 3' | -51.4 | NC_005809.1 | + | 19184 | 0.66 | 0.865633 |
Target: 5'- cCGUG-CCGCCGgCGUCGAugAuguucuGGc -3' miRNA: 3'- -GCACuGGCGGU-GCAGCUugUuguu--CC- -5' |
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26864 | 3' | -51.4 | NC_005809.1 | + | 11996 | 0.66 | 0.857203 |
Target: 5'- -uUGGCCuuuuCCACGUCGGccaGCAGCGcGGc -3' miRNA: 3'- gcACUGGc---GGUGCAGCU---UGUUGUuCC- -5' |
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26864 | 3' | -51.4 | NC_005809.1 | + | 5319 | 0.66 | 0.857203 |
Target: 5'- cCGUaGGCCGCgagCACGUgGcGCAGCAuGGc -3' miRNA: 3'- -GCA-CUGGCG---GUGCAgCuUGUUGUuCC- -5' |
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26864 | 3' | -51.4 | NC_005809.1 | + | 22815 | 0.67 | 0.848524 |
Target: 5'- --aGACCGCCuCGUgGccGGCAACAAcGGc -3' miRNA: 3'- gcaCUGGCGGuGCAgC--UUGUUGUU-CC- -5' |
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26864 | 3' | -51.4 | NC_005809.1 | + | 39824 | 0.67 | 0.848524 |
Target: 5'- aGUGGUCGgCACGccCGAGCAGCGccGGGc -3' miRNA: 3'- gCACUGGCgGUGCa-GCUUGUUGU--UCC- -5' |
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26864 | 3' | -51.4 | NC_005809.1 | + | 15711 | 0.67 | 0.848524 |
Target: 5'- --cGuCCGCCugGgcaUCGAACuggcGCGAGGc -3' miRNA: 3'- gcaCuGGCGGugC---AGCUUGu---UGUUCC- -5' |
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26864 | 3' | -51.4 | NC_005809.1 | + | 14185 | 0.67 | 0.8432 |
Target: 5'- ---cGCCGCCgGCGUCGAACuggaacaccucgcCAAGGa -3' miRNA: 3'- gcacUGGCGG-UGCAGCUUGuu-----------GUUCC- -5' |
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26864 | 3' | -51.4 | NC_005809.1 | + | 5595 | 0.67 | 0.824857 |
Target: 5'- cCGUGucgauguCCGCCucguugguagccacgGCGUCGAuguUGGCGAGGu -3' miRNA: 3'- -GCACu------GGCGG---------------UGCAGCUu--GUUGUUCC- -5' |
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26864 | 3' | -51.4 | NC_005809.1 | + | 11299 | 0.67 | 0.821082 |
Target: 5'- ---cGCUGCCACGUCGGGguCAACGAa- -3' miRNA: 3'- gcacUGGCGGUGCAGCUU--GUUGUUcc -5' |
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26864 | 3' | -51.4 | NC_005809.1 | + | 2041 | 0.67 | 0.821082 |
Target: 5'- --cGGCCGCCucgGCGaCGAugGAuuCAAGGg -3' miRNA: 3'- gcaCUGGCGG---UGCaGCUugUU--GUUCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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