Results 1 - 20 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26867 | 3' | -56.1 | NC_005809.1 | + | 5223 | 0.65 | 0.607653 |
Target: 5'- cGUCGAGGauguuggacgccaCGGUGUUGACGuugGCGUugGCAc -3' miRNA: 3'- -UAGCUCCg------------GCCAUAGCUGU---UGCG--CGU- -5' |
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26867 | 3' | -56.1 | NC_005809.1 | + | 17145 | 0.66 | 0.599833 |
Target: 5'- -gCGAGGCCgcuuuGGUacuucacGUCGuCGAUGCGCc -3' miRNA: 3'- uaGCUCCGG-----CCA-------UAGCuGUUGCGCGu -5' |
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26867 | 3' | -56.1 | NC_005809.1 | + | 37283 | 0.66 | 0.589799 |
Target: 5'- uAUCGAcGCCGuGgc-CGACAACGcCGCGa -3' miRNA: 3'- -UAGCUcCGGC-CauaGCUGUUGC-GCGU- -5' |
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26867 | 3' | -56.1 | NC_005809.1 | + | 30504 | 0.66 | 0.578686 |
Target: 5'- cGUCGAGGuuGagcaCGAgGugGCGCAg -3' miRNA: 3'- -UAGCUCCggCcauaGCUgUugCGCGU- -5' |
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26867 | 3' | -56.1 | NC_005809.1 | + | 18790 | 0.66 | 0.578686 |
Target: 5'- cGUCGAGGCCgccaccuuguuGGUgAUCuGGCGGCGCa-- -3' miRNA: 3'- -UAGCUCCGG-----------CCA-UAG-CUGUUGCGcgu -5' |
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26867 | 3' | -56.1 | NC_005809.1 | + | 14742 | 0.66 | 0.578686 |
Target: 5'- -gCGcGGCCGGcgccaccgCgGGCAGCGCGCGc -3' miRNA: 3'- uaGCuCCGGCCaua-----G-CUGUUGCGCGU- -5' |
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26867 | 3' | -56.1 | NC_005809.1 | + | 1468 | 0.66 | 0.578686 |
Target: 5'- gGUCGgcggccuccuggcAGGCCGGgguaucgcagugcugGUCgGACAugGCGCc -3' miRNA: 3'- -UAGC-------------UCCGGCCa--------------UAG-CUGUugCGCGu -5' |
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26867 | 3' | -56.1 | NC_005809.1 | + | 24961 | 0.66 | 0.578686 |
Target: 5'- -gCGGGGUCGaaGUCGuacuCGACGCGCc -3' miRNA: 3'- uaGCUCCGGCcaUAGCu---GUUGCGCGu -5' |
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26867 | 3' | -56.1 | NC_005809.1 | + | 29267 | 0.66 | 0.56762 |
Target: 5'- ----cGGCCGGUGUCGGgGugGaCGUg -3' miRNA: 3'- uagcuCCGGCCAUAGCUgUugC-GCGu -5' |
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26867 | 3' | -56.1 | NC_005809.1 | + | 34291 | 0.66 | 0.556607 |
Target: 5'- -cCGcGGCCug-GUCGAUAGCGUGCGu -3' miRNA: 3'- uaGCuCCGGccaUAGCUGUUGCGCGU- -5' |
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26867 | 3' | -56.1 | NC_005809.1 | + | 18817 | 0.66 | 0.556607 |
Target: 5'- cAUCG-GcCCGGUGgcgcCGGCAugGCGCu -3' miRNA: 3'- -UAGCuCcGGCCAUa---GCUGUugCGCGu -5' |
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26867 | 3' | -56.1 | NC_005809.1 | + | 15230 | 0.66 | 0.555509 |
Target: 5'- -gCGAGGUCGGcc-CGgccuacguggaaaGCAACGCGCGc -3' miRNA: 3'- uaGCUCCGGCCauaGC-------------UGUUGCGCGU- -5' |
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26867 | 3' | -56.1 | NC_005809.1 | + | 16875 | 0.67 | 0.523973 |
Target: 5'- -gCGGGGCUGGUAUgaGCAGCGuUGCc -3' miRNA: 3'- uaGCUCCGGCCAUAgcUGUUGC-GCGu -5' |
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26867 | 3' | -56.1 | NC_005809.1 | + | 9163 | 0.67 | 0.513255 |
Target: 5'- cUUGAgGGCCGGcagCGACAACuugGCGCc -3' miRNA: 3'- uAGCU-CCGGCCauaGCUGUUG---CGCGu -5' |
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26867 | 3' | -56.1 | NC_005809.1 | + | 24572 | 0.67 | 0.513255 |
Target: 5'- -gCGAGGCCGGccacgGUCGGgccgucCGGCGUGUc -3' miRNA: 3'- uaGCUCCGGCCa----UAGCU------GUUGCGCGu -5' |
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26867 | 3' | -56.1 | NC_005809.1 | + | 13915 | 0.67 | 0.502628 |
Target: 5'- -gCGAGGCCGccggcaccgAUCuGGCAcuGCGCGCGg -3' miRNA: 3'- uaGCUCCGGCca-------UAG-CUGU--UGCGCGU- -5' |
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26867 | 3' | -56.1 | NC_005809.1 | + | 10458 | 0.67 | 0.502628 |
Target: 5'- cGUCGAGGUCGGcagCGGcCAGgGCGUu -3' miRNA: 3'- -UAGCUCCGGCCauaGCU-GUUgCGCGu -5' |
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26867 | 3' | -56.1 | NC_005809.1 | + | 19739 | 0.67 | 0.502628 |
Target: 5'- -gCGcuGUCGGcUGUCGGCAGCGCgGCGa -3' miRNA: 3'- uaGCucCGGCC-AUAGCUGUUGCG-CGU- -5' |
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26867 | 3' | -56.1 | NC_005809.1 | + | 13160 | 0.67 | 0.492098 |
Target: 5'- cUCGAugucGGCCaGUGUCGGC--CGCGCu -3' miRNA: 3'- uAGCU----CCGGcCAUAGCUGuuGCGCGu -5' |
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26867 | 3' | -56.1 | NC_005809.1 | + | 7826 | 0.67 | 0.492098 |
Target: 5'- gGUCGAGGCgCGGcugcaCGAUGACcagGCGCAc -3' miRNA: 3'- -UAGCUCCG-GCCaua--GCUGUUG---CGCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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