miRNA display CGI


Results 21 - 40 of 40 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26867 3' -56.1 NC_005809.1 + 10458 0.67 0.502628
Target:  5'- cGUCGAGGUCGGcagCGGcCAGgGCGUu -3'
miRNA:   3'- -UAGCUCCGGCCauaGCU-GUUgCGCGu -5'
26867 3' -56.1 NC_005809.1 + 19739 0.67 0.502628
Target:  5'- -gCGcuGUCGGcUGUCGGCAGCGCgGCGa -3'
miRNA:   3'- uaGCucCGGCC-AUAGCUGUUGCG-CGU- -5'
26867 3' -56.1 NC_005809.1 + 16875 0.67 0.523973
Target:  5'- -gCGGGGCUGGUAUgaGCAGCGuUGCc -3'
miRNA:   3'- uaGCUCCGGCCAUAgcUGUUGC-GCGu -5'
26867 3' -56.1 NC_005809.1 + 15230 0.66 0.555509
Target:  5'- -gCGAGGUCGGcc-CGgccuacguggaaaGCAACGCGCGc -3'
miRNA:   3'- uaGCUCCGGCCauaGC-------------UGUUGCGCGU- -5'
26867 3' -56.1 NC_005809.1 + 18817 0.66 0.556607
Target:  5'- cAUCG-GcCCGGUGgcgcCGGCAugGCGCu -3'
miRNA:   3'- -UAGCuCcGGCCAUa---GCUGUugCGCGu -5'
26867 3' -56.1 NC_005809.1 + 34291 0.66 0.556607
Target:  5'- -cCGcGGCCug-GUCGAUAGCGUGCGu -3'
miRNA:   3'- uaGCuCCGGccaUAGCUGUUGCGCGU- -5'
26867 3' -56.1 NC_005809.1 + 14742 0.66 0.578686
Target:  5'- -gCGcGGCCGGcgccaccgCgGGCAGCGCGCGc -3'
miRNA:   3'- uaGCuCCGGCCaua-----G-CUGUUGCGCGU- -5'
26867 3' -56.1 NC_005809.1 + 6177 0.68 0.470326
Target:  5'- -gCGcAGGCCGGUcuugccgcagcGUuugcaggUGACGGCGCGCGg -3'
miRNA:   3'- uaGC-UCCGGCCA-----------UA-------GCUGUUGCGCGU- -5'
26867 3' -56.1 NC_005809.1 + 19035 0.68 0.441093
Target:  5'- -cCGAGGCC---AUCGACcGCGUGCGc -3'
miRNA:   3'- uaGCUCCGGccaUAGCUGuUGCGCGU- -5'
26867 3' -56.1 NC_005809.1 + 4557 0.68 0.431253
Target:  5'- cUUGAGGCCGaaGUCGcCGAgGCGCu -3'
miRNA:   3'- uAGCUCCGGCcaUAGCuGUUgCGCGu -5'
26867 3' -56.1 NC_005809.1 + 24965 1.07 0.000833
Target:  5'- cAUCGAGGCCGGUAUCGACAACGCGCAg -3'
miRNA:   3'- -UAGCUCCGGCCAUAGCUGUUGCGCGU- -5'
26867 3' -56.1 NC_005809.1 + 5451 0.78 0.10625
Target:  5'- -gCGAGGUCGGUAUCGACcaucACGcCGCGg -3'
miRNA:   3'- uaGCUCCGGCCAUAGCUGu---UGC-GCGU- -5'
26867 3' -56.1 NC_005809.1 + 37368 0.74 0.202533
Target:  5'- cUCGAcgugGGCaCGGUAgccggcaauaUCGACGACGUGCAg -3'
miRNA:   3'- uAGCU----CCG-GCCAU----------AGCUGUUGCGCGU- -5'
26867 3' -56.1 NC_005809.1 + 2818 0.72 0.257465
Target:  5'- cGUCG-GGCCaGGUGcucgCGGCcACGCGCAg -3'
miRNA:   3'- -UAGCuCCGG-CCAUa---GCUGuUGCGCGU- -5'
26867 3' -56.1 NC_005809.1 + 16326 0.71 0.300487
Target:  5'- -gCGGGuGCCcGUGccuUCGGCGACGCGCGc -3'
miRNA:   3'- uaGCUC-CGGcCAU---AGCUGUUGCGCGU- -5'
26867 3' -56.1 NC_005809.1 + 5311 0.71 0.308175
Target:  5'- gGUCGAGGCC-GUAggccgCGAgcaCGugGCGCAg -3'
miRNA:   3'- -UAGCUCCGGcCAUa----GCU---GUugCGCGU- -5'
26867 3' -56.1 NC_005809.1 + 5249 0.7 0.332136
Target:  5'- uUCGgccggcAGGUCGGgGUCGGCAAUGCGUc -3'
miRNA:   3'- uAGC------UCCGGCCaUAGCUGUUGCGCGu -5'
26867 3' -56.1 NC_005809.1 + 9751 0.7 0.340422
Target:  5'- cGUUGcGGCUGGUGUaguccgacCGGCAgACGCGCAg -3'
miRNA:   3'- -UAGCuCCGGCCAUA--------GCUGU-UGCGCGU- -5'
26867 3' -56.1 NC_005809.1 + 5575 0.69 0.415781
Target:  5'- uGUCGAGGCCGGcauacuccacgaauuUGgcccacUCGGCGGgGUGCGu -3'
miRNA:   3'- -UAGCUCCGGCC---------------AU------AGCUGUUgCGCGU- -5'
26867 3' -56.1 NC_005809.1 + 37283 0.66 0.589799
Target:  5'- uAUCGAcGCCGuGgc-CGACAACGcCGCGa -3'
miRNA:   3'- -UAGCUcCGGC-CauaGCUGUUGC-GCGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.