Results 1 - 20 of 164 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26869 | 5' | -61.2 | NC_005809.1 | + | 24166 | 1.11 | 0.000149 |
Target: 5'- aACGCCACCUUCGCCGACGUGGCCGCCa -3' miRNA: 3'- -UGCGGUGGAAGCGGCUGCACCGGCGG- -5' |
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26869 | 5' | -61.2 | NC_005809.1 | + | 33247 | 0.89 | 0.006946 |
Target: 5'- cCGCCGCCcgccgCGCCGACGUGcGCCGCCa -3' miRNA: 3'- uGCGGUGGaa---GCGGCUGCAC-CGGCGG- -5' |
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26869 | 5' | -61.2 | NC_005809.1 | + | 11582 | 0.82 | 0.027796 |
Target: 5'- cAUGCCGCCcagggcCGCCGGC-UGGCCGCCg -3' miRNA: 3'- -UGCGGUGGaa----GCGGCUGcACCGGCGG- -5' |
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26869 | 5' | -61.2 | NC_005809.1 | + | 7235 | 0.8 | 0.038085 |
Target: 5'- cGCGCuCACCcUCGgCGAUGUcGGCCGCCc -3' miRNA: 3'- -UGCG-GUGGaAGCgGCUGCA-CCGGCGG- -5' |
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26869 | 5' | -61.2 | NC_005809.1 | + | 18550 | 0.79 | 0.042686 |
Target: 5'- cGCGUCGCCUUCGCUGAauUGGCCGaCg -3' miRNA: 3'- -UGCGGUGGAAGCGGCUgcACCGGCgG- -5' |
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26869 | 5' | -61.2 | NC_005809.1 | + | 19214 | 0.78 | 0.050623 |
Target: 5'- cACGCCACCguguucaUCGgCGGCGaGGCCGUCg -3' miRNA: 3'- -UGCGGUGGa------AGCgGCUGCaCCGGCGG- -5' |
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26869 | 5' | -61.2 | NC_005809.1 | + | 679 | 0.77 | 0.059989 |
Target: 5'- -gGCCGCCUacggcggCGCCGGcCG-GGCCGCCc -3' miRNA: 3'- ugCGGUGGAa------GCGGCU-GCaCCGGCGG- -5' |
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26869 | 5' | -61.2 | NC_005809.1 | + | 13996 | 0.76 | 0.067143 |
Target: 5'- cACGCUGCCggUgGCCGACGUGcgcGCCGCg -3' miRNA: 3'- -UGCGGUGGa-AgCGGCUGCAC---CGGCGg -5' |
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26869 | 5' | -61.2 | NC_005809.1 | + | 16954 | 0.76 | 0.069056 |
Target: 5'- cGCGCUGCUggcgccgCGCCGcCGUGGuuGCCa -3' miRNA: 3'- -UGCGGUGGaa-----GCGGCuGCACCggCGG- -5' |
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26869 | 5' | -61.2 | NC_005809.1 | + | 14823 | 0.76 | 0.071022 |
Target: 5'- gGCGCUGCCUUCGCCcaggucGAUGccguUGGCgGCCa -3' miRNA: 3'- -UGCGGUGGAAGCGG------CUGC----ACCGgCGG- -5' |
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26869 | 5' | -61.2 | NC_005809.1 | + | 19461 | 0.76 | 0.071022 |
Target: 5'- cCGUUACCgcugUCGCCGugG-GcGCCGCCg -3' miRNA: 3'- uGCGGUGGa---AGCGGCugCaC-CGGCGG- -5' |
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26869 | 5' | -61.2 | NC_005809.1 | + | 13901 | 0.75 | 0.088797 |
Target: 5'- gGCG-CGCCg-CGCUGGCGaGGCCGCCg -3' miRNA: 3'- -UGCgGUGGaaGCGGCUGCaCCGGCGG- -5' |
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26869 | 5' | -61.2 | NC_005809.1 | + | 14351 | 0.75 | 0.091296 |
Target: 5'- gAC-CCGCgCguggUCGUCGGCGUGGCCGaCCu -3' miRNA: 3'- -UGcGGUG-Ga---AGCGGCUGCACCGGC-GG- -5' |
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26869 | 5' | -61.2 | NC_005809.1 | + | 29264 | 0.74 | 0.101976 |
Target: 5'- uACGCCGCCUacaaCGCCGGCcccGGCgCGCUg -3' miRNA: 3'- -UGCGGUGGAa---GCGGCUGca-CCG-GCGG- -5' |
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26869 | 5' | -61.2 | NC_005809.1 | + | 33348 | 0.74 | 0.101976 |
Target: 5'- cUGCCGCCgggcgCGCCGcagaACGUGcGCCGCg -3' miRNA: 3'- uGCGGUGGaa---GCGGC----UGCAC-CGGCGg -5' |
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26869 | 5' | -61.2 | NC_005809.1 | + | 27670 | 0.74 | 0.104825 |
Target: 5'- gGCGCCACCUcCaCCGugGUcuuggaauacaGGCCGCg -3' miRNA: 3'- -UGCGGUGGAaGcGGCugCA-----------CCGGCGg -5' |
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26869 | 5' | -61.2 | NC_005809.1 | + | 2019 | 0.74 | 0.110748 |
Target: 5'- uACGCCACCagCaCCGGCauaccGGCCGCCu -3' miRNA: 3'- -UGCGGUGGaaGcGGCUGca---CCGGCGG- -5' |
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26869 | 5' | -61.2 | NC_005809.1 | + | 32346 | 0.73 | 0.116983 |
Target: 5'- cCGCCGCCcaggUCGCUG-CGgucGCCGCCg -3' miRNA: 3'- uGCGGUGGa---AGCGGCuGCac-CGGCGG- -5' |
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26869 | 5' | -61.2 | NC_005809.1 | + | 34571 | 0.73 | 0.120222 |
Target: 5'- gGCGCCAagggcacguCCgaCGCCGugGUGcuGCUGCCu -3' miRNA: 3'- -UGCGGU---------GGaaGCGGCugCAC--CGGCGG- -5' |
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26869 | 5' | -61.2 | NC_005809.1 | + | 23764 | 0.73 | 0.123544 |
Target: 5'- gGCGCCACCgg-GCCGAUGc-GCCGCg -3' miRNA: 3'- -UGCGGUGGaagCGGCUGCacCGGCGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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