miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2687 3' -54.9 NC_001491.2 + 114755 0.66 0.946088
Target:  5'- ----gUGCGAUCGCgGCCacacaacagaGUGGAGu -3'
miRNA:   3'- uguaaAUGCUAGCGgCGGg---------CGCCUCu -5'
2687 3' -54.9 NC_001491.2 + 126967 0.66 0.94157
Target:  5'- aACGg--GCGcgCGCCGCCUgGCGGc-- -3'
miRNA:   3'- -UGUaaaUGCuaGCGGCGGG-CGCCucu -5'
2687 3' -54.9 NC_001491.2 + 32551 0.66 0.936812
Target:  5'- ------cCGAa--CCGCCCGCGGGGAu -3'
miRNA:   3'- uguaaauGCUagcGGCGGGCGCCUCU- -5'
2687 3' -54.9 NC_001491.2 + 140465 0.66 0.931815
Target:  5'- cCGUUUugGuUCGCUuccaaguuugGCCC-CGGAGAg -3'
miRNA:   3'- uGUAAAugCuAGCGG----------CGGGcGCCUCU- -5'
2687 3' -54.9 NC_001491.2 + 143454 0.67 0.921097
Target:  5'- -uGUUUGCGucaagagCGCCGCuuGCuGGGAc -3'
miRNA:   3'- ugUAAAUGCua-----GCGGCGggCGcCUCU- -5'
2687 3' -54.9 NC_001491.2 + 24724 0.67 0.896782
Target:  5'- -----cGCGA-CGCCGCCCcgcccCGGGGAc -3'
miRNA:   3'- uguaaaUGCUaGCGGCGGGc----GCCUCU- -5'
2687 3' -54.9 NC_001491.2 + 24750 0.72 0.645953
Target:  5'- cGCGg--GCGccCGCCGCCCGCcgggcgGGAGAc -3'
miRNA:   3'- -UGUaaaUGCuaGCGGCGGGCG------CCUCU- -5'
2687 3' -54.9 NC_001491.2 + 10133 0.73 0.584396
Target:  5'- -----gGCGccggGCCGCCCGCGGAGGc -3'
miRNA:   3'- uguaaaUGCuag-CGGCGGGCGCCUCU- -5'
2687 3' -54.9 NC_001491.2 + 107180 0.74 0.533972
Target:  5'- --cUUUGCGGcCGCCGCCCGUccgcuuucgccgGGAGAg -3'
miRNA:   3'- uguAAAUGCUaGCGGCGGGCG------------CCUCU- -5'
2687 3' -54.9 NC_001491.2 + 28592 0.77 0.386275
Target:  5'- cCAggUACGggCGCaggGCCCGCGGGGAu -3'
miRNA:   3'- uGUaaAUGCuaGCGg--CGGGCGCCUCU- -5'
2687 3' -54.9 NC_001491.2 + 52631 1.09 0.003871
Target:  5'- cACAUUUACGAUCGCCGCCCGCGGAGAg -3'
miRNA:   3'- -UGUAAAUGCUAGCGGCGGGCGCCUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.