miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2687 5' -60.7 NC_001491.2 + 109972 0.66 0.741264
Target:  5'- uCGCCAgcucCCGC--UCGgCgGCAGugGCGg -3'
miRNA:   3'- -GCGGU----GGCGgaAGUgGgCGUCugCGC- -5'
2687 5' -60.7 NC_001491.2 + 84908 0.66 0.741264
Target:  5'- aCGCCAgUGCgUcCACCgGCcuggaguuuGGGCGCGa -3'
miRNA:   3'- -GCGGUgGCGgAaGUGGgCG---------UCUGCGC- -5'
2687 5' -60.7 NC_001491.2 + 67218 0.66 0.731832
Target:  5'- -cCCACCGaCCacgUCACCa--AGACGCGa -3'
miRNA:   3'- gcGGUGGC-GGa--AGUGGgcgUCUGCGC- -5'
2687 5' -60.7 NC_001491.2 + 67610 0.66 0.731832
Target:  5'- gCGCUACCaGCCgcgcgaugagUUCGCgCGCuuGCGCGa -3'
miRNA:   3'- -GCGGUGG-CGG----------AAGUGgGCGucUGCGC- -5'
2687 5' -60.7 NC_001491.2 + 4453 0.66 0.72232
Target:  5'- aGCCGCCGCCggggccgaugCugCUGCuGcCGCc -3'
miRNA:   3'- gCGGUGGCGGaa--------GugGGCGuCuGCGc -5'
2687 5' -60.7 NC_001491.2 + 10130 0.66 0.72232
Target:  5'- aGCgG-CGCCgggcCGCCCGCGGAgGCc -3'
miRNA:   3'- gCGgUgGCGGaa--GUGGGCGUCUgCGc -5'
2687 5' -60.7 NC_001491.2 + 89140 0.66 0.716578
Target:  5'- aGCagCGCCGCCUUCAugaacugaugcgaguCgaaCGCGGACGUGc -3'
miRNA:   3'- gCG--GUGGCGGAAGU---------------Gg--GCGUCUGCGC- -5'
2687 5' -60.7 NC_001491.2 + 36184 0.66 0.703088
Target:  5'- cCGCC-CCGCCc---UCUGCuGACGCGa -3'
miRNA:   3'- -GCGGuGGCGGaaguGGGCGuCUGCGC- -5'
2687 5' -60.7 NC_001491.2 + 9836 0.66 0.699212
Target:  5'- aCGCC-CCGCCgaggaaauacaGCUCGCGGAgggcCGCGc -3'
miRNA:   3'- -GCGGuGGCGGaag--------UGGGCGUCU----GCGC- -5'
2687 5' -60.7 NC_001491.2 + 144820 0.66 0.693384
Target:  5'- gGCgGCCGCCagcucCAuagcggaugUCUGCAGGCGCGu -3'
miRNA:   3'- gCGgUGGCGGaa---GU---------GGGCGUCUGCGC- -5'
2687 5' -60.7 NC_001491.2 + 82176 0.66 0.693384
Target:  5'- aCGagCACCGCCgUCggACCCGaacucGACGCGg -3'
miRNA:   3'- -GCg-GUGGCGGaAG--UGGGCgu---CUGCGC- -5'
2687 5' -60.7 NC_001491.2 + 149713 0.66 0.693384
Target:  5'- uCGCauaACCGCUgcaUCACCggaGUGGGCGUGg -3'
miRNA:   3'- -GCGg--UGGCGGa--AGUGGg--CGUCUGCGC- -5'
2687 5' -60.7 NC_001491.2 + 90112 0.67 0.683632
Target:  5'- cCGCCGCCGCgCgcCGCUCGgAGgcuacacugaGCGCGu -3'
miRNA:   3'- -GCGGUGGCG-GaaGUGGGCgUC----------UGCGC- -5'
2687 5' -60.7 NC_001491.2 + 81506 0.67 0.683632
Target:  5'- gCGCCgacGCCGCCa-CGCCC-CAGguaaACGCGa -3'
miRNA:   3'- -GCGG---UGGCGGaaGUGGGcGUC----UGCGC- -5'
2687 5' -60.7 NC_001491.2 + 71963 0.67 0.673841
Target:  5'- aGCUGCUguauaGCCcUCACCCGCAGGgaggaugagaucUGCGu -3'
miRNA:   3'- gCGGUGG-----CGGaAGUGGGCGUCU------------GCGC- -5'
2687 5' -60.7 NC_001491.2 + 10055 0.67 0.673841
Target:  5'- uCGCUGCCGCgCUccgugggggacUUugCCGCGGucguGCGCGc -3'
miRNA:   3'- -GCGGUGGCG-GA-----------AGugGGCGUC----UGCGC- -5'
2687 5' -60.7 NC_001491.2 + 84347 0.67 0.673841
Target:  5'- uGCuCACCGCCUcugUC-UCCGCAGcaagaGCGg -3'
miRNA:   3'- gCG-GUGGCGGA---AGuGGGCGUCug---CGC- -5'
2687 5' -60.7 NC_001491.2 + 100736 0.67 0.673841
Target:  5'- gGCCAUgGCCg-UugCCGCcggggccgucccGGACGCGg -3'
miRNA:   3'- gCGGUGgCGGaaGugGGCG------------UCUGCGC- -5'
2687 5' -60.7 NC_001491.2 + 25500 0.67 0.664018
Target:  5'- gGCCgacGCCGCCgaUGCCaGCAG-CGCGg -3'
miRNA:   3'- gCGG---UGGCGGaaGUGGgCGUCuGCGC- -5'
2687 5' -60.7 NC_001491.2 + 64044 0.67 0.664018
Target:  5'- uGCCACgGCUUcuagcaGCUCGgGGGCGCGc -3'
miRNA:   3'- gCGGUGgCGGAag----UGGGCgUCUGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.