miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2687 5' -60.7 NC_001491.2 + 52665 1.09 0.001193
Target:  5'- uCGCCACCGCCUUCACCCGCAGACGCGg -3'
miRNA:   3'- -GCGGUGGCGGAAGUGGGCGUCUGCGC- -5'
2687 5' -60.7 NC_001491.2 + 10353 0.77 0.182135
Target:  5'- aCGCguUCGCCUgcucgCGCCCGCAGAUGUa -3'
miRNA:   3'- -GCGguGGCGGAa----GUGGGCGUCUGCGc -5'
2687 5' -60.7 NC_001491.2 + 24715 0.77 0.188407
Target:  5'- gGCCGCCGCCgcgacgCcgccccgccccggggACCCGCGGGCGCc -3'
miRNA:   3'- gCGGUGGCGGaa----G---------------UGGGCGUCUGCGc -5'
2687 5' -60.7 NC_001491.2 + 12864 0.77 0.191153
Target:  5'- gCGCCGCCGCCUgUGCCUGCGGGCc-- -3'
miRNA:   3'- -GCGGUGGCGGAaGUGGGCGUCUGcgc -5'
2687 5' -60.7 NC_001491.2 + 35145 0.76 0.231227
Target:  5'- uGCCugCGCCUggGCuCCGCcAGGCGCa -3'
miRNA:   3'- gCGGugGCGGAagUG-GGCG-UCUGCGc -5'
2687 5' -60.7 NC_001491.2 + 10516 0.75 0.247419
Target:  5'- aGCCGCCGCggcguacCUgcgCGCCCGCGGcCGCa -3'
miRNA:   3'- gCGGUGGCG-------GAa--GUGGGCGUCuGCGc -5'
2687 5' -60.7 NC_001491.2 + 36146 0.75 0.259721
Target:  5'- cCGCCuagacucCCGCCUcCAUCCGCuGACGCu -3'
miRNA:   3'- -GCGGu------GGCGGAaGUGGGCGuCUGCGc -5'
2687 5' -60.7 NC_001491.2 + 148430 0.74 0.284528
Target:  5'- aCGCuCGCCGUCcaCGCCCGCGGcCGCu -3'
miRNA:   3'- -GCG-GUGGCGGaaGUGGGCGUCuGCGc -5'
2687 5' -60.7 NC_001491.2 + 89397 0.73 0.31117
Target:  5'- gCGCCugCGCUgcgaagCAUCCGCAGuCGCc -3'
miRNA:   3'- -GCGGugGCGGaa----GUGGGCGUCuGCGc -5'
2687 5' -60.7 NC_001491.2 + 33555 0.73 0.347079
Target:  5'- gGCCGuCCGCCUUCagacucagggaGCUCGgGGACGCc -3'
miRNA:   3'- gCGGU-GGCGGAAG-----------UGGGCgUCUGCGc -5'
2687 5' -60.7 NC_001491.2 + 25028 0.72 0.377875
Target:  5'- cCGCCACCGCCggCACCgaggucuucCGCu-GCGCGc -3'
miRNA:   3'- -GCGGUGGCGGaaGUGG---------GCGucUGCGC- -5'
2687 5' -60.7 NC_001491.2 + 46485 0.72 0.377875
Target:  5'- uGCCGCCGUCUUCACaaaCGUguACGCu -3'
miRNA:   3'- gCGGUGGCGGAAGUGg--GCGucUGCGc -5'
2687 5' -60.7 NC_001491.2 + 107186 0.72 0.385856
Target:  5'- gGCCGCCGCCcguccgcuUUCGCCgGgAGAgCGCa -3'
miRNA:   3'- gCGGUGGCGG--------AAGUGGgCgUCU-GCGc -5'
2687 5' -60.7 NC_001491.2 + 141262 0.71 0.444728
Target:  5'- aCGCCACCGCUggaUCAgUCGC-GugGUGa -3'
miRNA:   3'- -GCGGUGGCGGa--AGUgGGCGuCugCGC- -5'
2687 5' -60.7 NC_001491.2 + 35642 0.7 0.462454
Target:  5'- gCGCC-CCGUgUaccUCGCCUGCGGccgGCGCGg -3'
miRNA:   3'- -GCGGuGGCGgA---AGUGGGCGUC---UGCGC- -5'
2687 5' -60.7 NC_001491.2 + 37924 0.7 0.471455
Target:  5'- aCGCCACCGUgUgcUCACCCGgGGGuuuccCGCc -3'
miRNA:   3'- -GCGGUGGCGgA--AGUGGGCgUCU-----GCGc -5'
2687 5' -60.7 NC_001491.2 + 120219 0.7 0.489718
Target:  5'- uCGCCAuacccCCGCCgcauaCCGCGGGCGUGc -3'
miRNA:   3'- -GCGGU-----GGCGGaagugGGCGUCUGCGC- -5'
2687 5' -60.7 NC_001491.2 + 124135 0.7 0.489718
Target:  5'- --aCACCGCCUguugCGCCUGCGcccacuGACGUGg -3'
miRNA:   3'- gcgGUGGCGGAa---GUGGGCGU------CUGCGC- -5'
2687 5' -60.7 NC_001491.2 + 12604 0.7 0.498973
Target:  5'- gGCCGCCGCCgcggcagCGgCCGCcccgGGGCGgGa -3'
miRNA:   3'- gCGGUGGCGGaa-----GUgGGCG----UCUGCgC- -5'
2687 5' -60.7 NC_001491.2 + 25104 0.7 0.508305
Target:  5'- gGCCcCCaCCUUCG-CCGCAGcCGCGg -3'
miRNA:   3'- gCGGuGGcGGAAGUgGGCGUCuGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.