miRNA display CGI


Results 21 - 40 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2687 5' -60.7 NC_001491.2 + 33810 0.67 0.661066
Target:  5'- -cCCACCGCCUgggcuccgacgagcUgCGCCuCGCGGuGCGCGc -3'
miRNA:   3'- gcGGUGGCGGA--------------A-GUGG-GCGUC-UGCGC- -5'
2687 5' -60.7 NC_001491.2 + 5377 0.67 0.654172
Target:  5'- cCGCCGCUGCCggCGgCCGaGGGCGa- -3'
miRNA:   3'- -GCGGUGGCGGaaGUgGGCgUCUGCgc -5'
2687 5' -60.7 NC_001491.2 + 12661 0.67 0.654172
Target:  5'- uCGaCCACCGCgUaaaUCACCCGCuuaacuguggguGGACGa- -3'
miRNA:   3'- -GC-GGUGGCGgA---AGUGGGCG------------UCUGCgc -5'
2687 5' -60.7 NC_001491.2 + 32374 0.67 0.644309
Target:  5'- cCGCCACC-CCgaagagCugCCGCuccGGCGCc -3'
miRNA:   3'- -GCGGUGGcGGaa----GugGGCGu--CUGCGc -5'
2687 5' -60.7 NC_001491.2 + 89218 0.67 0.634437
Target:  5'- -cUCACCGCCgcgcaaaACCCGCGccuGGCGCa -3'
miRNA:   3'- gcGGUGGCGGaag----UGGGCGU---CUGCGc -5'
2687 5' -60.7 NC_001491.2 + 13274 0.68 0.612722
Target:  5'- aGCCACCGCCUcugcggcugccaUugCUGCAGACa-- -3'
miRNA:   3'- gCGGUGGCGGAa-----------GugGGCGUCUGcgc -5'
2687 5' -60.7 NC_001491.2 + 76057 0.68 0.595001
Target:  5'- gCGCCGCCGCCgcagCAgcccucgcuCCCGCc-GCGCc -3'
miRNA:   3'- -GCGGUGGCGGaa--GU---------GGGCGucUGCGc -5'
2687 5' -60.7 NC_001491.2 + 76121 0.68 0.595001
Target:  5'- gCGCCGCCGCCgcagCAgcccucgcuCCCGCc-GCGCc -3'
miRNA:   3'- -GCGGUGGCGGaa--GU---------GGGCGucUGCGc -5'
2687 5' -60.7 NC_001491.2 + 76185 0.68 0.595001
Target:  5'- gCGCCGCCGCCgcagCAgcccucgcuCCCGCc-GCGCc -3'
miRNA:   3'- -GCGGUGGCGGaa--GU---------GGGCGucUGCGc -5'
2687 5' -60.7 NC_001491.2 + 144491 0.68 0.595001
Target:  5'- gCGCagaaACCGCCgUCgACCCuuCAGGCGCa -3'
miRNA:   3'- -GCGg---UGGCGGaAG-UGGGc-GUCUGCGc -5'
2687 5' -60.7 NC_001491.2 + 75993 0.68 0.595001
Target:  5'- gCGCCGCCGCCgcagCAgcccucgcuCCCGCc-GCGCc -3'
miRNA:   3'- -GCGGUGGCGGaa--GU---------GGGCGucUGCGc -5'
2687 5' -60.7 NC_001491.2 + 31994 0.68 0.585189
Target:  5'- gGCCACgGgCUccucaUCACCCGgCgguggGGACGCGg -3'
miRNA:   3'- gCGGUGgCgGA-----AGUGGGC-G-----UCUGCGC- -5'
2687 5' -60.7 NC_001491.2 + 105112 0.68 0.575409
Target:  5'- gGCCGCCGCagaUUUGgCCGgGGcCGCGg -3'
miRNA:   3'- gCGGUGGCGg--AAGUgGGCgUCuGCGC- -5'
2687 5' -60.7 NC_001491.2 + 105079 0.68 0.575409
Target:  5'- gGCCGCCGCagaUUUGgCCGgGGcCGCGg -3'
miRNA:   3'- gCGGUGGCGg--AAGUgGGCgUCuGCGC- -5'
2687 5' -60.7 NC_001491.2 + 105046 0.68 0.575409
Target:  5'- gGCCGCCGCagaUUUGgCCGgGGcCGCGg -3'
miRNA:   3'- gCGGUGGCGg--AAGUgGGCgUCuGCGC- -5'
2687 5' -60.7 NC_001491.2 + 105013 0.68 0.575409
Target:  5'- gGCCGCCGCagaUUUGgCCGgGGcCGCGg -3'
miRNA:   3'- gCGGUGGCGg--AAGUgGGCgUCuGCGC- -5'
2687 5' -60.7 NC_001491.2 + 104980 0.68 0.575409
Target:  5'- gGCCGCCGCagaUUUGgCCGgGGcCGCGg -3'
miRNA:   3'- gCGGUGGCGg--AAGUgGGCgUCuGCGC- -5'
2687 5' -60.7 NC_001491.2 + 76249 0.68 0.575409
Target:  5'- gCGCCGCCGCCgcagCAgcccucgcuCCCGCAuauaGCGa -3'
miRNA:   3'- -GCGGUGGCGGaa--GU---------GGGCGUcug-CGC- -5'
2687 5' -60.7 NC_001491.2 + 80171 0.69 0.565666
Target:  5'- uGCCGCCuGaCCggCGcCCCGCuGGCGCu -3'
miRNA:   3'- gCGGUGG-C-GGaaGU-GGGCGuCUGCGc -5'
2687 5' -60.7 NC_001491.2 + 26854 0.69 0.555967
Target:  5'- gCGCaCACgCGCgCUcguaCAUCUGCGGGCGCGa -3'
miRNA:   3'- -GCG-GUG-GCG-GAa---GUGGGCGUCUGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.