miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2687 5' -60.7 NC_001491.2 + 4453 0.66 0.72232
Target:  5'- aGCCGCCGCCggggccgaugCugCUGCuGcCGCc -3'
miRNA:   3'- gCGGUGGCGGaa--------GugGGCGuCuGCGc -5'
2687 5' -60.7 NC_001491.2 + 5377 0.67 0.654172
Target:  5'- cCGCCGCUGCCggCGgCCGaGGGCGa- -3'
miRNA:   3'- -GCGGUGGCGGaaGUgGGCgUCUGCgc -5'
2687 5' -60.7 NC_001491.2 + 9836 0.66 0.699212
Target:  5'- aCGCC-CCGCCgaggaaauacaGCUCGCGGAgggcCGCGc -3'
miRNA:   3'- -GCGGuGGCGGaag--------UGGGCGUCU----GCGC- -5'
2687 5' -60.7 NC_001491.2 + 10055 0.67 0.673841
Target:  5'- uCGCUGCCGCgCUccgugggggacUUugCCGCGGucguGCGCGc -3'
miRNA:   3'- -GCGGUGGCG-GA-----------AGugGGCGUC----UGCGC- -5'
2687 5' -60.7 NC_001491.2 + 10130 0.66 0.72232
Target:  5'- aGCgG-CGCCgggcCGCCCGCGGAgGCc -3'
miRNA:   3'- gCGgUgGCGGaa--GUGGGCGUCUgCGc -5'
2687 5' -60.7 NC_001491.2 + 10353 0.77 0.182135
Target:  5'- aCGCguUCGCCUgcucgCGCCCGCAGAUGUa -3'
miRNA:   3'- -GCGguGGCGGAa----GUGGGCGUCUGCGc -5'
2687 5' -60.7 NC_001491.2 + 10516 0.75 0.247419
Target:  5'- aGCCGCCGCggcguacCUgcgCGCCCGCGGcCGCa -3'
miRNA:   3'- gCGGUGGCG-------GAa--GUGGGCGUCuGCGc -5'
2687 5' -60.7 NC_001491.2 + 12604 0.7 0.498973
Target:  5'- gGCCGCCGCCgcggcagCGgCCGCcccgGGGCGgGa -3'
miRNA:   3'- gCGGUGGCGGaa-----GUgGGCG----UCUGCgC- -5'
2687 5' -60.7 NC_001491.2 + 12661 0.67 0.654172
Target:  5'- uCGaCCACCGCgUaaaUCACCCGCuuaacuguggguGGACGa- -3'
miRNA:   3'- -GC-GGUGGCGgA---AGUGGGCG------------UCUGCgc -5'
2687 5' -60.7 NC_001491.2 + 12864 0.77 0.191153
Target:  5'- gCGCCGCCGCCUgUGCCUGCGGGCc-- -3'
miRNA:   3'- -GCGGUGGCGGAaGUGGGCGUCUGcgc -5'
2687 5' -60.7 NC_001491.2 + 13274 0.68 0.612722
Target:  5'- aGCCACCGCCUcugcggcugccaUugCUGCAGACa-- -3'
miRNA:   3'- gCGGUGGCGGAa-----------GugGGCGUCUGcgc -5'
2687 5' -60.7 NC_001491.2 + 24715 0.77 0.188407
Target:  5'- gGCCGCCGCCgcgacgCcgccccgccccggggACCCGCGGGCGCc -3'
miRNA:   3'- gCGGUGGCGGaa----G---------------UGGGCGUCUGCGc -5'
2687 5' -60.7 NC_001491.2 + 25028 0.72 0.377875
Target:  5'- cCGCCACCGCCggCACCgaggucuucCGCu-GCGCGc -3'
miRNA:   3'- -GCGGUGGCGGaaGUGG---------GCGucUGCGC- -5'
2687 5' -60.7 NC_001491.2 + 25104 0.7 0.508305
Target:  5'- gGCCcCCaCCUUCG-CCGCAGcCGCGg -3'
miRNA:   3'- gCGGuGGcGGAAGUgGGCGUCuGCGC- -5'
2687 5' -60.7 NC_001491.2 + 25500 0.67 0.664018
Target:  5'- gGCCgacGCCGCCgaUGCCaGCAG-CGCGg -3'
miRNA:   3'- gCGG---UGGCGGaaGUGGgCGUCuGCGC- -5'
2687 5' -60.7 NC_001491.2 + 26854 0.69 0.555967
Target:  5'- gCGCaCACgCGCgCUcguaCAUCUGCGGGCGCGa -3'
miRNA:   3'- -GCG-GUG-GCG-GAa---GUGGGCGUCUGCGC- -5'
2687 5' -60.7 NC_001491.2 + 31994 0.68 0.585189
Target:  5'- gGCCACgGgCUccucaUCACCCGgCgguggGGACGCGg -3'
miRNA:   3'- gCGGUGgCgGA-----AGUGGGC-G-----UCUGCGC- -5'
2687 5' -60.7 NC_001491.2 + 32374 0.67 0.644309
Target:  5'- cCGCCACC-CCgaagagCugCCGCuccGGCGCc -3'
miRNA:   3'- -GCGGUGGcGGaa----GugGGCGu--CUGCGc -5'
2687 5' -60.7 NC_001491.2 + 33555 0.73 0.347079
Target:  5'- gGCCGuCCGCCUUCagacucagggaGCUCGgGGACGCc -3'
miRNA:   3'- gCGGU-GGCGGAAG-----------UGGGCgUCUGCGc -5'
2687 5' -60.7 NC_001491.2 + 33810 0.67 0.661066
Target:  5'- -cCCACCGCCUgggcuccgacgagcUgCGCCuCGCGGuGCGCGc -3'
miRNA:   3'- gcGGUGGCGGA--------------A-GUGG-GCGUC-UGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.