miRNA display CGI


Results 41 - 60 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2687 5' -60.7 NC_001491.2 + 84347 0.67 0.673841
Target:  5'- uGCuCACCGCCUcugUC-UCCGCAGcaagaGCGg -3'
miRNA:   3'- gCG-GUGGCGGA---AGuGGGCGUCug---CGC- -5'
2687 5' -60.7 NC_001491.2 + 84908 0.66 0.741264
Target:  5'- aCGCCAgUGCgUcCACCgGCcuggaguuuGGGCGCGa -3'
miRNA:   3'- -GCGGUgGCGgAaGUGGgCG---------UCUGCGC- -5'
2687 5' -60.7 NC_001491.2 + 89140 0.66 0.716578
Target:  5'- aGCagCGCCGCCUUCAugaacugaugcgaguCgaaCGCGGACGUGc -3'
miRNA:   3'- gCG--GUGGCGGAAGU---------------Gg--GCGUCUGCGC- -5'
2687 5' -60.7 NC_001491.2 + 89218 0.67 0.634437
Target:  5'- -cUCACCGCCgcgcaaaACCCGCGccuGGCGCa -3'
miRNA:   3'- gcGGUGGCGGaag----UGGGCGU---CUGCGc -5'
2687 5' -60.7 NC_001491.2 + 89397 0.73 0.31117
Target:  5'- gCGCCugCGCUgcgaagCAUCCGCAGuCGCc -3'
miRNA:   3'- -GCGGugGCGGaa----GUGGGCGUCuGCGc -5'
2687 5' -60.7 NC_001491.2 + 90112 0.67 0.683632
Target:  5'- cCGCCGCCGCgCgcCGCUCGgAGgcuacacugaGCGCGu -3'
miRNA:   3'- -GCGGUGGCG-GaaGUGGGCgUC----------UGCGC- -5'
2687 5' -60.7 NC_001491.2 + 99881 0.7 0.508305
Target:  5'- -cCCGCCGCCaccCACgCCGCAGuCGCc -3'
miRNA:   3'- gcGGUGGCGGaa-GUG-GGCGUCuGCGc -5'
2687 5' -60.7 NC_001491.2 + 100736 0.67 0.673841
Target:  5'- gGCCAUgGCCg-UugCCGCcggggccgucccGGACGCGg -3'
miRNA:   3'- gCGGUGgCGGaaGugGGCG------------UCUGCGC- -5'
2687 5' -60.7 NC_001491.2 + 104980 0.68 0.575409
Target:  5'- gGCCGCCGCagaUUUGgCCGgGGcCGCGg -3'
miRNA:   3'- gCGGUGGCGg--AAGUgGGCgUCuGCGC- -5'
2687 5' -60.7 NC_001491.2 + 105013 0.68 0.575409
Target:  5'- gGCCGCCGCagaUUUGgCCGgGGcCGCGg -3'
miRNA:   3'- gCGGUGGCGg--AAGUgGGCgUCuGCGC- -5'
2687 5' -60.7 NC_001491.2 + 105046 0.68 0.575409
Target:  5'- gGCCGCCGCagaUUUGgCCGgGGcCGCGg -3'
miRNA:   3'- gCGGUGGCGg--AAGUgGGCgUCuGCGC- -5'
2687 5' -60.7 NC_001491.2 + 105079 0.68 0.575409
Target:  5'- gGCCGCCGCagaUUUGgCCGgGGcCGCGg -3'
miRNA:   3'- gCGGUGGCGg--AAGUgGGCgUCuGCGC- -5'
2687 5' -60.7 NC_001491.2 + 105112 0.68 0.575409
Target:  5'- gGCCGCCGCagaUUUGgCCGgGGcCGCGg -3'
miRNA:   3'- gCGGUGGCGg--AAGUgGGCgUCuGCGC- -5'
2687 5' -60.7 NC_001491.2 + 107186 0.72 0.385856
Target:  5'- gGCCGCCGCCcguccgcuUUCGCCgGgAGAgCGCa -3'
miRNA:   3'- gCGGUGGCGG--------AAGUGGgCgUCU-GCGc -5'
2687 5' -60.7 NC_001491.2 + 109972 0.66 0.741264
Target:  5'- uCGCCAgcucCCGC--UCGgCgGCAGugGCGg -3'
miRNA:   3'- -GCGGU----GGCGgaAGUgGgCGUCugCGC- -5'
2687 5' -60.7 NC_001491.2 + 120219 0.7 0.489718
Target:  5'- uCGCCAuacccCCGCCgcauaCCGCGGGCGUGc -3'
miRNA:   3'- -GCGGU-----GGCGGaagugGGCGUCUGCGC- -5'
2687 5' -60.7 NC_001491.2 + 124135 0.7 0.489718
Target:  5'- --aCACCGCCUguugCGCCUGCGcccacuGACGUGg -3'
miRNA:   3'- gcgGUGGCGGAa---GUGGGCGU------CUGCGC- -5'
2687 5' -60.7 NC_001491.2 + 141262 0.71 0.444728
Target:  5'- aCGCCACCGCUggaUCAgUCGC-GugGUGa -3'
miRNA:   3'- -GCGGUGGCGGa--AGUgGGCGuCugCGC- -5'
2687 5' -60.7 NC_001491.2 + 144491 0.68 0.595001
Target:  5'- gCGCagaaACCGCCgUCgACCCuuCAGGCGCa -3'
miRNA:   3'- -GCGg---UGGCGGaAG-UGGGc-GUCUGCGc -5'
2687 5' -60.7 NC_001491.2 + 144820 0.66 0.693384
Target:  5'- gGCgGCCGCCagcucCAuagcggaugUCUGCAGGCGCGu -3'
miRNA:   3'- gCGgUGGCGGaa---GU---------GGGCGUCUGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.