Results 21 - 40 of 62 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2687 | 5' | -60.7 | NC_001491.2 | + | 33810 | 0.67 | 0.661066 |
Target: 5'- -cCCACCGCCUgggcuccgacgagcUgCGCCuCGCGGuGCGCGc -3' miRNA: 3'- gcGGUGGCGGA--------------A-GUGG-GCGUC-UGCGC- -5' |
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2687 | 5' | -60.7 | NC_001491.2 | + | 64044 | 0.67 | 0.664018 |
Target: 5'- uGCCACgGCUUcuagcaGCUCGgGGGCGCGc -3' miRNA: 3'- gCGGUGgCGGAag----UGGGCgUCUGCGC- -5' |
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2687 | 5' | -60.7 | NC_001491.2 | + | 9836 | 0.66 | 0.699212 |
Target: 5'- aCGCC-CCGCCgaggaaauacaGCUCGCGGAgggcCGCGc -3' miRNA: 3'- -GCGGuGGCGGaag--------UGGGCGUCU----GCGC- -5' |
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2687 | 5' | -60.7 | NC_001491.2 | + | 36184 | 0.66 | 0.703088 |
Target: 5'- cCGCC-CCGCCc---UCUGCuGACGCGa -3' miRNA: 3'- -GCGGuGGCGGaaguGGGCGuCUGCGC- -5' |
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2687 | 5' | -60.7 | NC_001491.2 | + | 89140 | 0.66 | 0.716578 |
Target: 5'- aGCagCGCCGCCUUCAugaacugaugcgaguCgaaCGCGGACGUGc -3' miRNA: 3'- gCG--GUGGCGGAAGU---------------Gg--GCGUCUGCGC- -5' |
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2687 | 5' | -60.7 | NC_001491.2 | + | 4453 | 0.66 | 0.72232 |
Target: 5'- aGCCGCCGCCggggccgaugCugCUGCuGcCGCc -3' miRNA: 3'- gCGGUGGCGGaa--------GugGGCGuCuGCGc -5' |
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2687 | 5' | -60.7 | NC_001491.2 | + | 10130 | 0.66 | 0.72232 |
Target: 5'- aGCgG-CGCCgggcCGCCCGCGGAgGCc -3' miRNA: 3'- gCGgUgGCGGaa--GUGGGCGUCUgCGc -5' |
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2687 | 5' | -60.7 | NC_001491.2 | + | 67610 | 0.66 | 0.731832 |
Target: 5'- gCGCUACCaGCCgcgcgaugagUUCGCgCGCuuGCGCGa -3' miRNA: 3'- -GCGGUGG-CGG----------AAGUGgGCGucUGCGC- -5' |
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2687 | 5' | -60.7 | NC_001491.2 | + | 67218 | 0.66 | 0.731832 |
Target: 5'- -cCCACCGaCCacgUCACCa--AGACGCGa -3' miRNA: 3'- gcGGUGGC-GGa--AGUGGgcgUCUGCGC- -5' |
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2687 | 5' | -60.7 | NC_001491.2 | + | 84908 | 0.66 | 0.741264 |
Target: 5'- aCGCCAgUGCgUcCACCgGCcuggaguuuGGGCGCGa -3' miRNA: 3'- -GCGGUgGCGgAaGUGGgCG---------UCUGCGC- -5' |
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2687 | 5' | -60.7 | NC_001491.2 | + | 149713 | 0.66 | 0.693384 |
Target: 5'- uCGCauaACCGCUgcaUCACCggaGUGGGCGUGg -3' miRNA: 3'- -GCGg--UGGCGGa--AGUGGg--CGUCUGCGC- -5' |
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2687 | 5' | -60.7 | NC_001491.2 | + | 82176 | 0.66 | 0.693384 |
Target: 5'- aCGagCACCGCCgUCggACCCGaacucGACGCGg -3' miRNA: 3'- -GCg-GUGGCGGaAG--UGGGCgu---CUGCGC- -5' |
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2687 | 5' | -60.7 | NC_001491.2 | + | 25500 | 0.67 | 0.664018 |
Target: 5'- gGCCgacGCCGCCgaUGCCaGCAG-CGCGg -3' miRNA: 3'- gCGG---UGGCGGaaGUGGgCGUCuGCGC- -5' |
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2687 | 5' | -60.7 | NC_001491.2 | + | 71963 | 0.67 | 0.673841 |
Target: 5'- aGCUGCUguauaGCCcUCACCCGCAGGgaggaugagaucUGCGu -3' miRNA: 3'- gCGGUGG-----CGGaAGUGGGCGUCU------------GCGC- -5' |
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2687 | 5' | -60.7 | NC_001491.2 | + | 10055 | 0.67 | 0.673841 |
Target: 5'- uCGCUGCCGCgCUccgugggggacUUugCCGCGGucguGCGCGc -3' miRNA: 3'- -GCGGUGGCG-GA-----------AGugGGCGUC----UGCGC- -5' |
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2687 | 5' | -60.7 | NC_001491.2 | + | 84347 | 0.67 | 0.673841 |
Target: 5'- uGCuCACCGCCUcugUC-UCCGCAGcaagaGCGg -3' miRNA: 3'- gCG-GUGGCGGA---AGuGGGCGUCug---CGC- -5' |
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2687 | 5' | -60.7 | NC_001491.2 | + | 100736 | 0.67 | 0.673841 |
Target: 5'- gGCCAUgGCCg-UugCCGCcggggccgucccGGACGCGg -3' miRNA: 3'- gCGGUGgCGGaaGugGGCG------------UCUGCGC- -5' |
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2687 | 5' | -60.7 | NC_001491.2 | + | 81506 | 0.67 | 0.683632 |
Target: 5'- gCGCCgacGCCGCCa-CGCCC-CAGguaaACGCGa -3' miRNA: 3'- -GCGG---UGGCGGaaGUGGGcGUC----UGCGC- -5' |
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2687 | 5' | -60.7 | NC_001491.2 | + | 90112 | 0.67 | 0.683632 |
Target: 5'- cCGCCGCCGCgCgcCGCUCGgAGgcuacacugaGCGCGu -3' miRNA: 3'- -GCGGUGGCG-GaaGUGGGCgUC----------UGCGC- -5' |
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2687 | 5' | -60.7 | NC_001491.2 | + | 144820 | 0.66 | 0.693384 |
Target: 5'- gGCgGCCGCCagcucCAuagcggaugUCUGCAGGCGCGu -3' miRNA: 3'- gCGgUGGCGGaa---GU---------GGGCGUCUGCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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