miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26870 3' -62.4 NC_005809.1 + 23078 0.66 0.317861
Target:  5'- -cCACgGUucGCaGCGGCCUgcCCACCGGc -3'
miRNA:   3'- caGUGgCGcuCG-CGCCGGA--GGUGGCU- -5'
26870 3' -62.4 NC_005809.1 + 32346 0.66 0.317861
Target:  5'- -cCGCCGCccaggucGCuGCGGUCgCCGCCGAg -3'
miRNA:   3'- caGUGGCGcu-----CG-CGCCGGaGGUGGCU- -5'
26870 3' -62.4 NC_005809.1 + 14307 0.66 0.317861
Target:  5'- cGUCGuuGCugaacuGGCGCGcGCCUUgGCUGAa -3'
miRNA:   3'- -CAGUggCGc-----UCGCGC-CGGAGgUGGCU- -5'
26870 3' -62.4 NC_005809.1 + 27659 0.66 0.317861
Target:  5'- -cUACCcagGUGGGCGCcaCCUCCACCGu -3'
miRNA:   3'- caGUGG---CGCUCGCGccGGAGGUGGCu -5'
26870 3' -62.4 NC_005809.1 + 25617 0.66 0.317861
Target:  5'- -cCACgGCG-GCGCGGUCgccagcagcgcgUCCACCu- -3'
miRNA:   3'- caGUGgCGCuCGCGCCGG------------AGGUGGcu -5'
26870 3' -62.4 NC_005809.1 + 16870 0.66 0.315593
Target:  5'- -cCGCCGCGgggcugguaugagcAGCGuuGCCgaaaUCCGCCGGc -3'
miRNA:   3'- caGUGGCGC--------------UCGCgcCGG----AGGUGGCU- -5'
26870 3' -62.4 NC_005809.1 + 33259 0.66 0.310348
Target:  5'- -gCGCCGaCGuGCGCcGCCaggUCGCCGAg -3'
miRNA:   3'- caGUGGC-GCuCGCGcCGGa--GGUGGCU- -5'
26870 3' -62.4 NC_005809.1 + 28567 0.66 0.310348
Target:  5'- -cCAUCGCG-GCGCGcacGUCggCCACCGGc -3'
miRNA:   3'- caGUGGCGCuCGCGC---CGGa-GGUGGCU- -5'
26870 3' -62.4 NC_005809.1 + 28883 0.66 0.309605
Target:  5'- cUCGCUGCuGGCGUaguugcuGGCCgUCGCCGAc -3'
miRNA:   3'- cAGUGGCGcUCGCG-------CCGGaGGUGGCU- -5'
26870 3' -62.4 NC_005809.1 + 19471 0.66 0.302972
Target:  5'- uGUCGCCGUGGGCGCcGCCgUUgGCguCGGg -3'
miRNA:   3'- -CAGUGGCGCUCGCGcCGG-AGgUG--GCU- -5'
26870 3' -62.4 NC_005809.1 + 2944 0.66 0.302972
Target:  5'- -aCACCGCGucGCGCGGCa--CGUCGAg -3'
miRNA:   3'- caGUGGCGCu-CGCGCCGgagGUGGCU- -5'
26870 3' -62.4 NC_005809.1 + 33997 0.66 0.302972
Target:  5'- --gGCCGCacGCGCGGCCUacgaCGCCc- -3'
miRNA:   3'- cagUGGCGcuCGCGCCGGAg---GUGGcu -5'
26870 3' -62.4 NC_005809.1 + 33588 0.66 0.302972
Target:  5'- -cCACCGCuGGCuaucGCGGCacggCCACCGc -3'
miRNA:   3'- caGUGGCGcUCG----CGCCGga--GGUGGCu -5'
26870 3' -62.4 NC_005809.1 + 10343 0.66 0.302972
Target:  5'- cGUCGCUGCG-GCGUGuGCCUUCuucuCCc- -3'
miRNA:   3'- -CAGUGGCGCuCGCGC-CGGAGGu---GGcu -5'
26870 3' -62.4 NC_005809.1 + 33300 0.66 0.302972
Target:  5'- -cCACCGCuGGCuaucGCGGCacggCCACCGc -3'
miRNA:   3'- caGUGGCGcUCG----CGCCGga--GGUGGCu -5'
26870 3' -62.4 NC_005809.1 + 33444 0.66 0.302972
Target:  5'- -cCACCGCuGGCuaucGCGGCacggCCACCGc -3'
miRNA:   3'- caGUGGCGcUCG----CGCCGga--GGUGGCu -5'
26870 3' -62.4 NC_005809.1 + 23338 0.66 0.302972
Target:  5'- --aGCCGCGcaauuCGaCGGCCUcgCCGCCGAu -3'
miRNA:   3'- cagUGGCGCuc---GC-GCCGGA--GGUGGCU- -5'
26870 3' -62.4 NC_005809.1 + 8578 0.66 0.302972
Target:  5'- cGUCguagGCCGCGcGUGCGGCCUgguGCUGGa -3'
miRNA:   3'- -CAG----UGGCGCuCGCGCCGGAgg-UGGCU- -5'
26870 3' -62.4 NC_005809.1 + 17067 0.66 0.298611
Target:  5'- uUCACCucGCGcacgaaggcgaagccGGCGCGGuUCUCgGCCGGg -3'
miRNA:   3'- cAGUGG--CGC---------------UCGCGCC-GGAGgUGGCU- -5'
26870 3' -62.4 NC_005809.1 + 35344 0.66 0.295731
Target:  5'- aUCGCCGaggguGAGCGCGGCgCagaugCUGCCGu -3'
miRNA:   3'- cAGUGGCg----CUCGCGCCG-Ga----GGUGGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.