miRNA display CGI


Results 21 - 40 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26870 5' -56.2 NC_005809.1 + 41261 0.67 0.544444
Target:  5'- -gUCGGCCugguGGCCGucgCCCuggGCGCgGc -3'
miRNA:   3'- gaAGCCGGu---CCGGUua-GGGu--UGUGgC- -5'
26870 5' -56.2 NC_005809.1 + 41364 0.67 0.512183
Target:  5'- -aUCGGCCaugaGGGCgGuuAUUCCAACAacCCGg -3'
miRNA:   3'- gaAGCCGG----UCCGgU--UAGGGUUGU--GGC- -5'
26870 5' -56.2 NC_005809.1 + 32715 0.67 0.512183
Target:  5'- --gCGcGCCGGuGCCAcgCUCAucgACGCCGa -3'
miRNA:   3'- gaaGC-CGGUC-CGGUuaGGGU---UGUGGC- -5'
26870 5' -56.2 NC_005809.1 + 8120 0.67 0.501603
Target:  5'- -cUCGGCCAuuucGGCgGugacuUCCCAGCccuuGCCGu -3'
miRNA:   3'- gaAGCCGGU----CCGgUu----AGGGUUG----UGGC- -5'
26870 5' -56.2 NC_005809.1 + 30731 0.68 0.450264
Target:  5'- gUUCGcCCAGGCCAA-CCgCGGCgcgGCCGg -3'
miRNA:   3'- gAAGCcGGUCCGGUUaGG-GUUG---UGGC- -5'
26870 5' -56.2 NC_005809.1 + 37767 0.68 0.450264
Target:  5'- --cCGGCCAG--CAAUCCCGcaGCGCCa -3'
miRNA:   3'- gaaGCCGGUCcgGUUAGGGU--UGUGGc -5'
26870 5' -56.2 NC_005809.1 + 18135 0.68 0.480739
Target:  5'- -gUC-GCCgAGGCCGcgCgCGGCACCGa -3'
miRNA:   3'- gaAGcCGG-UCCGGUuaGgGUUGUGGC- -5'
26870 5' -56.2 NC_005809.1 + 14547 0.68 0.439358
Target:  5'- uCUUCGGCgAcGCCGAcaugaucggcuucUUCCAGCGCCu -3'
miRNA:   3'- -GAAGCCGgUcCGGUU-------------AGGGUUGUGGc -5'
26870 5' -56.2 NC_005809.1 + 7697 0.68 0.440343
Target:  5'- --gCGGCCGGuaGCCcucgaaguGAUCCC-ACACCGc -3'
miRNA:   3'- gaaGCCGGUC--CGG--------UUAGGGuUGUGGC- -5'
26870 5' -56.2 NC_005809.1 + 17833 0.68 0.440343
Target:  5'- -cUCGGgCGGGUUGAUgCCCGcCACCGu -3'
miRNA:   3'- gaAGCCgGUCCGGUUA-GGGUuGUGGC- -5'
26870 5' -56.2 NC_005809.1 + 14134 0.68 0.457281
Target:  5'- -gUCGGCCAgcggcuugccuuccGGCCG-UUCCAGCGCg- -3'
miRNA:   3'- gaAGCCGGU--------------CCGGUuAGGGUUGUGgc -5'
26870 5' -56.2 NC_005809.1 + 34946 0.68 0.460306
Target:  5'- ---aGGCCaAGGCCAcgugUCCGGCGCUGc -3'
miRNA:   3'- gaagCCGG-UCCGGUua--GGGUUGUGGC- -5'
26870 5' -56.2 NC_005809.1 + 13747 0.68 0.460306
Target:  5'- ---aGGUCGGGUUguuuuGUUCCAGCGCCGa -3'
miRNA:   3'- gaagCCGGUCCGGu----UAGGGUUGUGGC- -5'
26870 5' -56.2 NC_005809.1 + 29584 0.68 0.477645
Target:  5'- -gUCGGCCgcgcccaggcgcgcGGuuuGCCAGUugUCCAGCGCCGg -3'
miRNA:   3'- gaAGCCGG--------------UC---CGGUUA--GGGUUGUGGC- -5'
26870 5' -56.2 NC_005809.1 + 34886 0.68 0.480739
Target:  5'- --cCGGCCgccgAGGUCAAgCCCGACgACCu -3'
miRNA:   3'- gaaGCCGG----UCCGGUUaGGGUUG-UGGc -5'
26870 5' -56.2 NC_005809.1 + 9697 0.69 0.383567
Target:  5'- cCUUCcaGUCGGGCgcgaCAAUCUCGGCGCCGa -3'
miRNA:   3'- -GAAGc-CGGUCCG----GUUAGGGUUGUGGC- -5'
26870 5' -56.2 NC_005809.1 + 27886 0.69 0.392688
Target:  5'- aCUgcaGGCCGGGCUucaagcgCUCAACACCc -3'
miRNA:   3'- -GAag-CCGGUCCGGuua----GGGUUGUGGc -5'
26870 5' -56.2 NC_005809.1 + 6233 0.69 0.392688
Target:  5'- cCUUCGGCCAGGg----CCUGcACGCCGg -3'
miRNA:   3'- -GAAGCCGGUCCgguuaGGGU-UGUGGC- -5'
26870 5' -56.2 NC_005809.1 + 37369 0.69 0.401949
Target:  5'- --cCGGUugCAGGCCAGcaccaCCAGCACCa -3'
miRNA:   3'- gaaGCCG--GUCCGGUUag---GGUUGUGGc -5'
26870 5' -56.2 NC_005809.1 + 8828 0.69 0.411348
Target:  5'- -cUgGGUCGGGCCAG-CCgCAACGCgGg -3'
miRNA:   3'- gaAgCCGGUCCGGUUaGG-GUUGUGgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.