Results 61 - 78 of 78 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26870 | 5' | -56.2 | NC_005809.1 | + | 25483 | 0.67 | 0.53361 |
Target: 5'- ---aGGCCcGGCCGAgaaCCG-CGCCGg -3' miRNA: 3'- gaagCCGGuCCGGUUag-GGUuGUGGC- -5' |
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26870 | 5' | -56.2 | NC_005809.1 | + | 24321 | 0.67 | 0.544444 |
Target: 5'- -cUCGGCgCAGGUCGugaCCGGCAUCc -3' miRNA: 3'- gaAGCCG-GUCCGGUuagGGUUGUGGc -5' |
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26870 | 5' | -56.2 | NC_005809.1 | + | 41261 | 0.67 | 0.544444 |
Target: 5'- -gUCGGCCugguGGCCGucgCCCuggGCGCgGc -3' miRNA: 3'- gaAGCCGGu---CCGGUua-GGGu--UGUGgC- -5' |
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26870 | 5' | -56.2 | NC_005809.1 | + | 19271 | 0.66 | 0.55207 |
Target: 5'- --cCGGCCAGuGCCGGccgcaaacaggcauUCguggcgcacgCCGACACCGa -3' miRNA: 3'- gaaGCCGGUC-CGGUU--------------AG----------GGUUGUGGC- -5' |
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26870 | 5' | -56.2 | NC_005809.1 | + | 40805 | 0.66 | 0.559728 |
Target: 5'- -aUCGGCCcgacgcgccaggcgcAGGCCGG--CCAugACCGc -3' miRNA: 3'- gaAGCCGG---------------UCCGGUUagGGUugUGGC- -5' |
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26870 | 5' | -56.2 | NC_005809.1 | + | 1195 | 0.66 | 0.566315 |
Target: 5'- -gUCGGCCGGGuuguuggaauaaCCGccCUCAugGCCGa -3' miRNA: 3'- gaAGCCGGUCC------------GGUuaGGGUugUGGC- -5' |
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26870 | 5' | -56.2 | NC_005809.1 | + | 4751 | 0.66 | 0.572922 |
Target: 5'- -cUCGGCCAcGGCCGcgauguucucggcGUucgcccacacugcgCCCAgcACGCCGg -3' miRNA: 3'- gaAGCCGGU-CCGGU-------------UA--------------GGGU--UGUGGC- -5' |
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26870 | 5' | -56.2 | NC_005809.1 | + | 24584 | 0.66 | 0.577337 |
Target: 5'- --aCGGUCGGGCCG--UCCGGCguguccuuGCCGg -3' miRNA: 3'- gaaGCCGGUCCGGUuaGGGUUG--------UGGC- -5' |
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26870 | 5' | -56.2 | NC_005809.1 | + | 33785 | 0.66 | 0.588405 |
Target: 5'- --cCGGCgC-GGCCGA-CCCAucguGCGCCGc -3' miRNA: 3'- gaaGCCG-GuCCGGUUaGGGU----UGUGGC- -5' |
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26870 | 5' | -56.2 | NC_005809.1 | + | 18567 | 0.66 | 0.592843 |
Target: 5'- -aUUGGCCGacgcgcccaccuucGCCAGUCUguGCGCCGa -3' miRNA: 3'- gaAGCCGGUc-------------CGGUUAGGguUGUGGC- -5' |
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26870 | 5' | -56.2 | NC_005809.1 | + | 5009 | 0.66 | 0.599511 |
Target: 5'- -gUCGGCgCAGuCCGcUUUCAGCGCCGc -3' miRNA: 3'- gaAGCCG-GUCcGGUuAGGGUUGUGGC- -5' |
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26870 | 5' | -56.2 | NC_005809.1 | + | 28501 | 0.66 | 0.599511 |
Target: 5'- uUUCuGGCacccUAGGCaacgacgCCCAGCGCCGg -3' miRNA: 3'- gAAG-CCG----GUCCGguua---GGGUUGUGGC- -5' |
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26870 | 5' | -56.2 | NC_005809.1 | + | 9791 | 0.66 | 0.599511 |
Target: 5'- --gCGGCCAGGUCGcgC---ACGCCGa -3' miRNA: 3'- gaaGCCGGUCCGGUuaGgguUGUGGC- -5' |
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26870 | 5' | -56.2 | NC_005809.1 | + | 9546 | 0.66 | 0.599511 |
Target: 5'- gUUCGGCCAGuG-CGAUCUgcuCGCCGg -3' miRNA: 3'- gAAGCCGGUC-CgGUUAGGguuGUGGC- -5' |
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26870 | 5' | -56.2 | NC_005809.1 | + | 19973 | 0.66 | 0.610646 |
Target: 5'- uUUCGGgCAGGCCGccgauGUCCgCGuagaacuCGCCa -3' miRNA: 3'- gAAGCCgGUCCGGU-----UAGG-GUu------GUGGc -5' |
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26870 | 5' | -56.2 | NC_005809.1 | + | 3780 | 0.66 | 0.610646 |
Target: 5'- -cUCGGUCGuGCCGAaagCCAGCGCCu -3' miRNA: 3'- gaAGCCGGUcCGGUUag-GGUUGUGGc -5' |
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26870 | 5' | -56.2 | NC_005809.1 | + | 24142 | 0.66 | 0.610646 |
Target: 5'- --cCGGCUGcGcGCCuggCCCAGCGCCu -3' miRNA: 3'- gaaGCCGGU-C-CGGuuaGGGUUGUGGc -5' |
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26870 | 5' | -56.2 | NC_005809.1 | + | 25722 | 0.66 | 0.610646 |
Target: 5'- --gCGGCgGGGUCGucGUCCU--CACCGg -3' miRNA: 3'- gaaGCCGgUCCGGU--UAGGGuuGUGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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