Results 1 - 20 of 78 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26870 | 5' | -56.2 | NC_005809.1 | + | 696 | 0.75 | 0.15836 |
Target: 5'- --cCGGCCGGGCCg--CCCAagAUACCGc -3' miRNA: 3'- gaaGCCGGUCCGGuuaGGGU--UGUGGC- -5' |
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26870 | 5' | -56.2 | NC_005809.1 | + | 719 | 0.74 | 0.202721 |
Target: 5'- -gUCGGCCAcGGCCAAgUCgAGCGCCu -3' miRNA: 3'- gaAGCCGGU-CCGGUUaGGgUUGUGGc -5' |
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26870 | 5' | -56.2 | NC_005809.1 | + | 1195 | 0.66 | 0.566315 |
Target: 5'- -gUCGGCCGGGuuguuggaauaaCCGccCUCAugGCCGa -3' miRNA: 3'- gaAGCCGGUCC------------GGUuaGGGUugUGGC- -5' |
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26870 | 5' | -56.2 | NC_005809.1 | + | 3780 | 0.66 | 0.610646 |
Target: 5'- -cUCGGUCGuGCCGAaagCCAGCGCCu -3' miRNA: 3'- gaAGCCGGUcCGGUUag-GGUUGUGGc -5' |
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26870 | 5' | -56.2 | NC_005809.1 | + | 4613 | 0.69 | 0.383567 |
Target: 5'- -gUCaGCCAGGCCAAUguuggCCC-GCGCUGc -3' miRNA: 3'- gaAGcCGGUCCGGUUA-----GGGuUGUGGC- -5' |
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26870 | 5' | -56.2 | NC_005809.1 | + | 4751 | 0.66 | 0.572922 |
Target: 5'- -cUCGGCCAcGGCCGcgauguucucggcGUucgcccacacugcgCCCAgcACGCCGg -3' miRNA: 3'- gaAGCCGGU-CCGGU-------------UA--------------GGGU--UGUGGC- -5' |
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26870 | 5' | -56.2 | NC_005809.1 | + | 4798 | 0.69 | 0.383567 |
Target: 5'- gCUUUGGCgUAGGCCAgcuuguagagGUCggggCCGGCGCCGu -3' miRNA: 3'- -GAAGCCG-GUCCGGU----------UAG----GGUUGUGGC- -5' |
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26870 | 5' | -56.2 | NC_005809.1 | + | 4858 | 0.69 | 0.420882 |
Target: 5'- --gCGGCCAGcuuCCAAUCCU--CGCCGg -3' miRNA: 3'- gaaGCCGGUCc--GGUUAGGGuuGUGGC- -5' |
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26870 | 5' | -56.2 | NC_005809.1 | + | 4866 | 0.72 | 0.264261 |
Target: 5'- --cCGGUCAGGUCGuugCCCAGCGCgGc -3' miRNA: 3'- gaaGCCGGUCCGGUua-GGGUUGUGgC- -5' |
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26870 | 5' | -56.2 | NC_005809.1 | + | 5009 | 0.66 | 0.599511 |
Target: 5'- -gUCGGCgCAGuCCGcUUUCAGCGCCGc -3' miRNA: 3'- gaAGCCG-GUCcGGUuAGGGUUGUGGC- -5' |
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26870 | 5' | -56.2 | NC_005809.1 | + | 6233 | 0.69 | 0.392688 |
Target: 5'- cCUUCGGCCAGGg----CCUGcACGCCGg -3' miRNA: 3'- -GAAGCCGGUCCgguuaGGGU-UGUGGC- -5' |
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26870 | 5' | -56.2 | NC_005809.1 | + | 7238 | 0.69 | 0.420882 |
Target: 5'- aCUUCGGCCAcuGGCgCGggCCgAuguCGCCGg -3' miRNA: 3'- -GAAGCCGGU--CCG-GUuaGGgUu--GUGGC- -5' |
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26870 | 5' | -56.2 | NC_005809.1 | + | 7697 | 0.68 | 0.440343 |
Target: 5'- --gCGGCCGGuaGCCcucgaaguGAUCCC-ACACCGc -3' miRNA: 3'- gaaGCCGGUC--CGG--------UUAGGGuUGUGGC- -5' |
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26870 | 5' | -56.2 | NC_005809.1 | + | 8120 | 0.67 | 0.501603 |
Target: 5'- -cUCGGCCAuuucGGCgGugacuUCCCAGCccuuGCCGu -3' miRNA: 3'- gaAGCCGGU----CCGgUu----AGGGUUG----UGGC- -5' |
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26870 | 5' | -56.2 | NC_005809.1 | + | 8828 | 0.69 | 0.411348 |
Target: 5'- -cUgGGUCGGGCCAG-CCgCAACGCgGg -3' miRNA: 3'- gaAgCCGGUCCGGUUaGG-GUUGUGgC- -5' |
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26870 | 5' | -56.2 | NC_005809.1 | + | 8882 | 0.7 | 0.331864 |
Target: 5'- gUUCGGCCuuGGC--GUCCCAcCACUGg -3' miRNA: 3'- gAAGCCGGu-CCGguUAGGGUuGUGGC- -5' |
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26870 | 5' | -56.2 | NC_005809.1 | + | 9546 | 0.66 | 0.599511 |
Target: 5'- gUUCGGCCAGuG-CGAUCUgcuCGCCGg -3' miRNA: 3'- gAAGCCGGUC-CgGUUAGGguuGUGGC- -5' |
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26870 | 5' | -56.2 | NC_005809.1 | + | 9697 | 0.69 | 0.383567 |
Target: 5'- cCUUCcaGUCGGGCgcgaCAAUCUCGGCGCCGa -3' miRNA: 3'- -GAAGc-CGGUCCG----GUUAGGGUUGUGGC- -5' |
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26870 | 5' | -56.2 | NC_005809.1 | + | 9791 | 0.66 | 0.599511 |
Target: 5'- --gCGGCCAGGUCGcgC---ACGCCGa -3' miRNA: 3'- gaaGCCGGUCCGGUuaGgguUGUGGC- -5' |
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26870 | 5' | -56.2 | NC_005809.1 | + | 10987 | 0.73 | 0.225697 |
Target: 5'- gUUCGGCCAGGCCGgAUUgCAugAgCGu -3' miRNA: 3'- gAAGCCGGUCCGGU-UAGgGUugUgGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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