miRNA display CGI


Results 21 - 40 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26870 5' -56.2 NC_005809.1 + 11852 0.67 0.53361
Target:  5'- -gUUGGCCuGGgCGAaCCCcGCGCCa -3'
miRNA:   3'- gaAGCCGGuCCgGUUaGGGuUGUGGc -5'
26870 5' -56.2 NC_005809.1 + 13166 0.71 0.323761
Target:  5'- -gUCGGCCAgugucGGCCGcgCUgGGCGCCc -3'
miRNA:   3'- gaAGCCGGU-----CCGGUuaGGgUUGUGGc -5'
26870 5' -56.2 NC_005809.1 + 13369 0.69 0.430548
Target:  5'- gCUUCuGGaaaUAGGCCAugCCCAGCGCgCGg -3'
miRNA:   3'- -GAAG-CCg--GUCCGGUuaGGGUUGUG-GC- -5'
26870 5' -56.2 NC_005809.1 + 13747 0.68 0.460306
Target:  5'- ---aGGUCGGGUUguuuuGUUCCAGCGCCGa -3'
miRNA:   3'- gaagCCGGUCCGGu----UAGGGUUGUGGC- -5'
26870 5' -56.2 NC_005809.1 + 13912 0.69 0.401949
Target:  5'- --cUGGCgAGGCCG---CCGGCACCGa -3'
miRNA:   3'- gaaGCCGgUCCGGUuagGGUUGUGGC- -5'
26870 5' -56.2 NC_005809.1 + 14134 0.68 0.457281
Target:  5'- -gUCGGCCAgcggcuugccuuccGGCCG-UUCCAGCGCg- -3'
miRNA:   3'- gaAGCCGGU--------------CCGGUuAGGGUUGUGgc -5'
26870 5' -56.2 NC_005809.1 + 14244 0.74 0.186847
Target:  5'- ---aGGCCaAGGCCAucgagUCCGACGCCGa -3'
miRNA:   3'- gaagCCGG-UCCGGUua---GGGUUGUGGC- -5'
26870 5' -56.2 NC_005809.1 + 14366 0.71 0.323761
Target:  5'- -gUCGGCguGGCCGA-CCUggacaaGGCGCCGc -3'
miRNA:   3'- gaAGCCGguCCGGUUaGGG------UUGUGGC- -5'
26870 5' -56.2 NC_005809.1 + 14415 0.69 0.383567
Target:  5'- --aCGGCguGGUCGAUCUgAcCACCGg -3'
miRNA:   3'- gaaGCCGguCCGGUUAGGgUuGUGGC- -5'
26870 5' -56.2 NC_005809.1 + 14547 0.68 0.439358
Target:  5'- uCUUCGGCgAcGCCGAcaugaucggcuucUUCCAGCGCCu -3'
miRNA:   3'- -GAAGCCGgUcCGGUU-------------AGGGUUGUGGc -5'
26870 5' -56.2 NC_005809.1 + 14830 0.7 0.365751
Target:  5'- cCUUCGcCCAGGUCGAUgCCGuuggcggccaGCGCCGc -3'
miRNA:   3'- -GAAGCcGGUCCGGUUAgGGU----------UGUGGC- -5'
26870 5' -56.2 NC_005809.1 + 17243 0.72 0.263576
Target:  5'- --cCGGCCuGGaCAAUCCCGgcgacgaGCGCCGg -3'
miRNA:   3'- gaaGCCGGuCCgGUUAGGGU-------UGUGGC- -5'
26870 5' -56.2 NC_005809.1 + 17833 0.68 0.440343
Target:  5'- -cUCGGgCGGGUUGAUgCCCGcCACCGu -3'
miRNA:   3'- gaAGCCgGUCCGGUUA-GGGUuGUGGC- -5'
26870 5' -56.2 NC_005809.1 + 18135 0.68 0.480739
Target:  5'- -gUC-GCCgAGGCCGcgCgCGGCACCGa -3'
miRNA:   3'- gaAGcCGG-UCCGGUuaGgGUUGUGGC- -5'
26870 5' -56.2 NC_005809.1 + 18567 0.66 0.592843
Target:  5'- -aUUGGCCGacgcgcccaccuucGCCAGUCUguGCGCCGa -3'
miRNA:   3'- gaAGCCGGUc-------------CGGUUAGGguUGUGGC- -5'
26870 5' -56.2 NC_005809.1 + 19030 0.72 0.25748
Target:  5'- -gUCGGCCgAGGCCAucgaCCGcguGCGCCGc -3'
miRNA:   3'- gaAGCCGG-UCCGGUuag-GGU---UGUGGC- -5'
26870 5' -56.2 NC_005809.1 + 19271 0.66 0.55207
Target:  5'- --cCGGCCAGuGCCGGccgcaaacaggcauUCguggcgcacgCCGACACCGa -3'
miRNA:   3'- gaaGCCGGUC-CGGUU--------------AG----------GGUUGUGGC- -5'
26870 5' -56.2 NC_005809.1 + 19355 0.69 0.401949
Target:  5'- --gUGGCCgAGGCCGAggCCGAauuCACCGa -3'
miRNA:   3'- gaaGCCGG-UCCGGUUagGGUU---GUGGC- -5'
26870 5' -56.2 NC_005809.1 + 19751 0.72 0.263576
Target:  5'- -gUCGGCagcgcggcgaaguCGGGCCAGUC-CGGCACCa -3'
miRNA:   3'- gaAGCCG-------------GUCCGGUUAGgGUUGUGGc -5'
26870 5' -56.2 NC_005809.1 + 19781 0.67 0.53361
Target:  5'- uCUUCacugauuGCCAGGCCGG-CCCGguagaACACCc -3'
miRNA:   3'- -GAAGc------CGGUCCGGUUaGGGU-----UGUGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.