miRNA display CGI


Results 61 - 78 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26870 5' -56.2 NC_005809.1 + 30731 0.68 0.450264
Target:  5'- gUUCGcCCAGGCCAA-CCgCGGCgcgGCCGg -3'
miRNA:   3'- gAAGCcGGUCCGGUUaGG-GUUG---UGGC- -5'
26870 5' -56.2 NC_005809.1 + 31290 0.75 0.167391
Target:  5'- uUUCcGCCuaccuGGCCGagcGUCCCAGCGCCGc -3'
miRNA:   3'- gAAGcCGGu----CCGGU---UAGGGUUGUGGC- -5'
26870 5' -56.2 NC_005809.1 + 32315 0.69 0.430548
Target:  5'- -aUCGccGCCAucaaGGCCGgcGUCCCGACAaCCGc -3'
miRNA:   3'- gaAGC--CGGU----CCGGU--UAGGGUUGU-GGC- -5'
26870 5' -56.2 NC_005809.1 + 32715 0.67 0.512183
Target:  5'- --gCGcGCCGGuGCCAcgCUCAucgACGCCGa -3'
miRNA:   3'- gaaGC-CGGUC-CGGUuaGGGU---UGUGGC- -5'
26870 5' -56.2 NC_005809.1 + 32938 0.73 0.225697
Target:  5'- gUUCGGCCAGGgCGA-CCaCGGCugCGu -3'
miRNA:   3'- gAAGCCGGUCCgGUUaGG-GUUGugGC- -5'
26870 5' -56.2 NC_005809.1 + 33490 0.73 0.237992
Target:  5'- --aCGGCCucgcGGCCAGUgaggggaugcacCCCGAUACCGu -3'
miRNA:   3'- gaaGCCGGu---CCGGUUA------------GGGUUGUGGC- -5'
26870 5' -56.2 NC_005809.1 + 33785 0.66 0.588405
Target:  5'- --cCGGCgC-GGCCGA-CCCAucguGCGCCGc -3'
miRNA:   3'- gaaGCCG-GuCCGGUUaGGGU----UGUGGC- -5'
26870 5' -56.2 NC_005809.1 + 33878 0.69 0.430548
Target:  5'- --cCGaCCcGGCCAGUacaCCAACGCCGa -3'
miRNA:   3'- gaaGCcGGuCCGGUUAg--GGUUGUGGC- -5'
26870 5' -56.2 NC_005809.1 + 34104 0.7 0.340115
Target:  5'- -gUCGGCugcggcaucgCAGGCCAc-CUCGACGCCGa -3'
miRNA:   3'- gaAGCCG----------GUCCGGUuaGGGUUGUGGC- -5'
26870 5' -56.2 NC_005809.1 + 34886 0.68 0.480739
Target:  5'- --cCGGCCgccgAGGUCAAgCCCGACgACCu -3'
miRNA:   3'- gaaGCCGG----UCCGGUUaGGGUUG-UGGc -5'
26870 5' -56.2 NC_005809.1 + 34946 0.68 0.460306
Target:  5'- ---aGGCCaAGGCCAcgugUCCGGCGCUGc -3'
miRNA:   3'- gaagCCGG-UCCGGUua--GGGUUGUGGC- -5'
26870 5' -56.2 NC_005809.1 + 37320 0.69 0.411348
Target:  5'- --aCGGU--GGCCGGUgCCAACGCCa -3'
miRNA:   3'- gaaGCCGguCCGGUUAgGGUUGUGGc -5'
26870 5' -56.2 NC_005809.1 + 37369 0.69 0.401949
Target:  5'- --cCGGUugCAGGCCAGcaccaCCAGCACCa -3'
miRNA:   3'- gaaGCCG--GUCCGGUUag---GGUUGUGGc -5'
26870 5' -56.2 NC_005809.1 + 37767 0.68 0.450264
Target:  5'- --cCGGCCAG--CAAUCCCGcaGCGCCa -3'
miRNA:   3'- gaaGCCGGUCcgGUUAGGGU--UGUGGc -5'
26870 5' -56.2 NC_005809.1 + 38803 0.67 0.512183
Target:  5'- uUUCGGCacgaccgAGGCUAcgUCCAgcggcgGCACCGa -3'
miRNA:   3'- gAAGCCGg------UCCGGUuaGGGU------UGUGGC- -5'
26870 5' -56.2 NC_005809.1 + 40805 0.66 0.559728
Target:  5'- -aUCGGCCcgacgcgccaggcgcAGGCCGG--CCAugACCGc -3'
miRNA:   3'- gaAGCCGG---------------UCCGGUUagGGUugUGGC- -5'
26870 5' -56.2 NC_005809.1 + 41261 0.67 0.544444
Target:  5'- -gUCGGCCugguGGCCGucgCCCuggGCGCgGc -3'
miRNA:   3'- gaAGCCGGu---CCGGUua-GGGu--UGUGgC- -5'
26870 5' -56.2 NC_005809.1 + 41364 0.67 0.512183
Target:  5'- -aUCGGCCaugaGGGCgGuuAUUCCAACAacCCGg -3'
miRNA:   3'- gaAGCCGG----UCCGgU--UAGGGUUGU--GGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.