miRNA display CGI


Results 21 - 40 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26870 5' -56.2 NC_005809.1 + 29033 0.81 0.069006
Target:  5'- gCUUCGGCCAGGUCGAUaCCCAcCGgCGg -3'
miRNA:   3'- -GAAGCCGGUCCGGUUA-GGGUuGUgGC- -5'
26870 5' -56.2 NC_005809.1 + 28841 0.77 0.133854
Target:  5'- --gCGGCCGGacuuGCCGaagcuGUCCCAGCGCCGc -3'
miRNA:   3'- gaaGCCGGUC----CGGU-----UAGGGUUGUGGC- -5'
26870 5' -56.2 NC_005809.1 + 28501 0.66 0.599511
Target:  5'- uUUCuGGCacccUAGGCaacgacgCCCAGCGCCGg -3'
miRNA:   3'- gAAG-CCG----GUCCGguua---GGGUUGUGGC- -5'
26870 5' -56.2 NC_005809.1 + 27886 0.69 0.392688
Target:  5'- aCUgcaGGCCGGGCUucaagcgCUCAACACCc -3'
miRNA:   3'- -GAag-CCGGUCCGGuua----GGGUUGUGGc -5'
26870 5' -56.2 NC_005809.1 + 27581 0.69 0.430548
Target:  5'- -aUUGGCaacGCCAAUgCCGACGCCa -3'
miRNA:   3'- gaAGCCGgucCGGUUAgGGUUGUGGc -5'
26870 5' -56.2 NC_005809.1 + 27350 0.73 0.244347
Target:  5'- ---aGGCCGGGCCGAccUCgCAGCACuCGu -3'
miRNA:   3'- gaagCCGGUCCGGUU--AGgGUUGUG-GC- -5'
26870 5' -56.2 NC_005809.1 + 26059 0.69 0.430548
Target:  5'- -aUCGGCCAGaCCA---CCGGCACCu -3'
miRNA:   3'- gaAGCCGGUCcGGUuagGGUUGUGGc -5'
26870 5' -56.2 NC_005809.1 + 25722 0.66 0.610646
Target:  5'- --gCGGCgGGGUCGucGUCCU--CACCGg -3'
miRNA:   3'- gaaGCCGgUCCGGU--UAGGGuuGUGGC- -5'
26870 5' -56.2 NC_005809.1 + 25533 0.7 0.340115
Target:  5'- aUUCGGCCAagaaggugcGGCUcAUCCCGuuCACCu -3'
miRNA:   3'- gAAGCCGGU---------CCGGuUAGGGUu-GUGGc -5'
26870 5' -56.2 NC_005809.1 + 25483 0.67 0.53361
Target:  5'- ---aGGCCcGGCCGAgaaCCG-CGCCGg -3'
miRNA:   3'- gaagCCGGuCCGGUUag-GGUuGUGGC- -5'
26870 5' -56.2 NC_005809.1 + 24720 0.76 0.149771
Target:  5'- -gUCGGUCGGGCCGcUUCCAccGCGCCu -3'
miRNA:   3'- gaAGCCGGUCCGGUuAGGGU--UGUGGc -5'
26870 5' -56.2 NC_005809.1 + 24584 0.66 0.577337
Target:  5'- --aCGGUCGGGCCG--UCCGGCguguccuuGCCGg -3'
miRNA:   3'- gaaGCCGGUCCGGUuaGGGUUG--------UGGC- -5'
26870 5' -56.2 NC_005809.1 + 24321 0.67 0.544444
Target:  5'- -cUCGGCgCAGGUCGugaCCGGCAUCc -3'
miRNA:   3'- gaAGCCG-GUCCGGUuagGGUUGUGGc -5'
26870 5' -56.2 NC_005809.1 + 24202 0.71 0.300343
Target:  5'- -aUCGGCaAGGCCAAcCUCGcCGCCGg -3'
miRNA:   3'- gaAGCCGgUCCGGUUaGGGUuGUGGC- -5'
26870 5' -56.2 NC_005809.1 + 24142 0.66 0.610646
Target:  5'- --cCGGCUGcGcGCCuggCCCAGCGCCu -3'
miRNA:   3'- gaaGCCGGU-C-CGGuuaGGGUUGUGGc -5'
26870 5' -56.2 NC_005809.1 + 24041 1.1 0.000478
Target:  5'- aCUUCGGCCAGGCCAAUCCCAACACCGg -3'
miRNA:   3'- -GAAGCCGGUCCGGUUAGGGUUGUGGC- -5'
26870 5' -56.2 NC_005809.1 + 23996 0.69 0.392688
Target:  5'- --aCGGCCAGGCCGucaCCgCGAgcgcggccucCACCGa -3'
miRNA:   3'- gaaGCCGGUCCGGUua-GG-GUU----------GUGGC- -5'
26870 5' -56.2 NC_005809.1 + 19973 0.66 0.610646
Target:  5'- uUUCGGgCAGGCCGccgauGUCCgCGuagaacuCGCCa -3'
miRNA:   3'- gAAGCCgGUCCGGU-----UAGG-GUu------GUGGc -5'
26870 5' -56.2 NC_005809.1 + 19781 0.67 0.53361
Target:  5'- uCUUCacugauuGCCAGGCCGG-CCCGguagaACACCc -3'
miRNA:   3'- -GAAGc------CGGUCCGGUUaGGGU-----UGUGGc -5'
26870 5' -56.2 NC_005809.1 + 19751 0.72 0.263576
Target:  5'- -gUCGGCagcgcggcgaaguCGGGCCAGUC-CGGCACCa -3'
miRNA:   3'- gaAGCCG-------------GUCCGGUUAGgGUUGUGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.