Results 21 - 40 of 78 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26870 | 5' | -56.2 | NC_005809.1 | + | 28841 | 0.77 | 0.133854 |
Target: 5'- --gCGGCCGGacuuGCCGaagcuGUCCCAGCGCCGc -3' miRNA: 3'- gaaGCCGGUC----CGGU-----UAGGGUUGUGGC- -5' |
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26870 | 5' | -56.2 | NC_005809.1 | + | 24720 | 0.76 | 0.149771 |
Target: 5'- -gUCGGUCGGGCCGcUUCCAccGCGCCu -3' miRNA: 3'- gaAGCCGGUCCGGUuAGGGU--UGUGGc -5' |
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26870 | 5' | -56.2 | NC_005809.1 | + | 696 | 0.75 | 0.15836 |
Target: 5'- --cCGGCCGGGCCg--CCCAagAUACCGc -3' miRNA: 3'- gaaGCCGGUCCGGuuaGGGU--UGUGGC- -5' |
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26870 | 5' | -56.2 | NC_005809.1 | + | 10987 | 0.73 | 0.225697 |
Target: 5'- gUUCGGCCAGGCCGgAUUgCAugAgCGu -3' miRNA: 3'- gAAGCCGGUCCGGU-UAGgGUugUgGC- -5' |
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26870 | 5' | -56.2 | NC_005809.1 | + | 32938 | 0.73 | 0.225697 |
Target: 5'- gUUCGGCCAGGgCGA-CCaCGGCugCGu -3' miRNA: 3'- gAAGCCGGUCCgGUUaGG-GUUGugGC- -5' |
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26870 | 5' | -56.2 | NC_005809.1 | + | 27350 | 0.73 | 0.244347 |
Target: 5'- ---aGGCCGGGCCGAccUCgCAGCACuCGu -3' miRNA: 3'- gaagCCGGUCCGGUU--AGgGUUGUG-GC- -5' |
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26870 | 5' | -56.2 | NC_005809.1 | + | 4866 | 0.72 | 0.264261 |
Target: 5'- --cCGGUCAGGUCGuugCCCAGCGCgGc -3' miRNA: 3'- gaaGCCGGUCCGGUua-GGGUUGUGgC- -5' |
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26870 | 5' | -56.2 | NC_005809.1 | + | 13166 | 0.71 | 0.323761 |
Target: 5'- -gUCGGCCAgugucGGCCGcgCUgGGCGCCc -3' miRNA: 3'- gaAGCCGGU-----CCGGUuaGGgUUGUGGc -5' |
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26870 | 5' | -56.2 | NC_005809.1 | + | 34104 | 0.7 | 0.340115 |
Target: 5'- -gUCGGCugcggcaucgCAGGCCAc-CUCGACGCCGa -3' miRNA: 3'- gaAGCCG----------GUCCGGUuaGGGUUGUGGC- -5' |
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26870 | 5' | -56.2 | NC_005809.1 | + | 32315 | 0.69 | 0.430548 |
Target: 5'- -aUCGccGCCAucaaGGCCGgcGUCCCGACAaCCGc -3' miRNA: 3'- gaAGC--CGGU----CCGGU--UAGGGUUGU-GGC- -5' |
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26870 | 5' | -56.2 | NC_005809.1 | + | 13369 | 0.69 | 0.430548 |
Target: 5'- gCUUCuGGaaaUAGGCCAugCCCAGCGCgCGg -3' miRNA: 3'- -GAAG-CCg--GUCCGGUuaGGGUUGUG-GC- -5' |
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26870 | 5' | -56.2 | NC_005809.1 | + | 8828 | 0.69 | 0.411348 |
Target: 5'- -cUgGGUCGGGCCAG-CCgCAACGCgGg -3' miRNA: 3'- gaAgCCGGUCCGGUUaGG-GUUGUGgC- -5' |
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26870 | 5' | -56.2 | NC_005809.1 | + | 37369 | 0.69 | 0.401949 |
Target: 5'- --cCGGUugCAGGCCAGcaccaCCAGCACCa -3' miRNA: 3'- gaaGCCG--GUCCGGUUag---GGUUGUGGc -5' |
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26870 | 5' | -56.2 | NC_005809.1 | + | 6233 | 0.69 | 0.392688 |
Target: 5'- cCUUCGGCCAGGg----CCUGcACGCCGg -3' miRNA: 3'- -GAAGCCGGUCCgguuaGGGU-UGUGGC- -5' |
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26870 | 5' | -56.2 | NC_005809.1 | + | 4613 | 0.69 | 0.383567 |
Target: 5'- -gUCaGCCAGGCCAAUguuggCCC-GCGCUGc -3' miRNA: 3'- gaAGcCGGUCCGGUUA-----GGGuUGUGGC- -5' |
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26870 | 5' | -56.2 | NC_005809.1 | + | 14830 | 0.7 | 0.365751 |
Target: 5'- cCUUCGcCCAGGUCGAUgCCGuuggcggccaGCGCCGc -3' miRNA: 3'- -GAAGCcGGUCCGGUUAgGGU----------UGUGGC- -5' |
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26870 | 5' | -56.2 | NC_005809.1 | + | 28501 | 0.66 | 0.599511 |
Target: 5'- uUUCuGGCacccUAGGCaacgacgCCCAGCGCCGg -3' miRNA: 3'- gAAG-CCG----GUCCGguua---GGGUUGUGGC- -5' |
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26870 | 5' | -56.2 | NC_005809.1 | + | 31290 | 0.75 | 0.167391 |
Target: 5'- uUUCcGCCuaccuGGCCGagcGUCCCAGCGCCGc -3' miRNA: 3'- gAAGcCGGu----CCGGU---UAGGGUUGUGGC- -5' |
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26870 | 5' | -56.2 | NC_005809.1 | + | 29102 | 0.75 | 0.181804 |
Target: 5'- -aUCGcCCAGGUCAugCCCGACACCGc -3' miRNA: 3'- gaAGCcGGUCCGGUuaGGGUUGUGGC- -5' |
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26870 | 5' | -56.2 | NC_005809.1 | + | 14244 | 0.74 | 0.186847 |
Target: 5'- ---aGGCCaAGGCCAucgagUCCGACGCCGa -3' miRNA: 3'- gaagCCGG-UCCGGUua---GGGUUGUGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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