miRNA display CGI


Results 41 - 60 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26870 5' -56.2 NC_005809.1 + 13912 0.69 0.401949
Target:  5'- --cUGGCgAGGCCG---CCGGCACCGa -3'
miRNA:   3'- gaaGCCGgUCCGGUuagGGUUGUGGC- -5'
26870 5' -56.2 NC_005809.1 + 19355 0.69 0.401949
Target:  5'- --gUGGCCgAGGCCGAggCCGAauuCACCGa -3'
miRNA:   3'- gaaGCCGG-UCCGGUUagGGUU---GUGGC- -5'
26870 5' -56.2 NC_005809.1 + 37320 0.69 0.411348
Target:  5'- --aCGGU--GGCCGGUgCCAACGCCa -3'
miRNA:   3'- gaaGCCGguCCGGUUAgGGUUGUGGc -5'
26870 5' -56.2 NC_005809.1 + 4858 0.69 0.420882
Target:  5'- --gCGGCCAGcuuCCAAUCCU--CGCCGg -3'
miRNA:   3'- gaaGCCGGUCc--GGUUAGGGuuGUGGC- -5'
26870 5' -56.2 NC_005809.1 + 7238 0.69 0.420882
Target:  5'- aCUUCGGCCAcuGGCgCGggCCgAuguCGCCGg -3'
miRNA:   3'- -GAAGCCGGU--CCG-GUuaGGgUu--GUGGC- -5'
26870 5' -56.2 NC_005809.1 + 33878 0.69 0.430548
Target:  5'- --cCGaCCcGGCCAGUacaCCAACGCCGa -3'
miRNA:   3'- gaaGCcGGuCCGGUUAg--GGUUGUGGC- -5'
26870 5' -56.2 NC_005809.1 + 26059 0.69 0.430548
Target:  5'- -aUCGGCCAGaCCA---CCGGCACCu -3'
miRNA:   3'- gaAGCCGGUCcGGUuagGGUUGUGGc -5'
26870 5' -56.2 NC_005809.1 + 4798 0.69 0.383567
Target:  5'- gCUUUGGCgUAGGCCAgcuuguagagGUCggggCCGGCGCCGu -3'
miRNA:   3'- -GAAGCCG-GUCCGGU----------UAG----GGUUGUGGC- -5'
26870 5' -56.2 NC_005809.1 + 25533 0.7 0.340115
Target:  5'- aUUCGGCCAagaaggugcGGCUcAUCCCGuuCACCu -3'
miRNA:   3'- gAAGCCGGU---------CCGGuUAGGGUu-GUGGc -5'
26870 5' -56.2 NC_005809.1 + 8882 0.7 0.331864
Target:  5'- gUUCGGCCuuGGC--GUCCCAcCACUGg -3'
miRNA:   3'- gAAGCCGGu-CCGguUAGGGUuGUGGC- -5'
26870 5' -56.2 NC_005809.1 + 31290 0.75 0.167391
Target:  5'- uUUCcGCCuaccuGGCCGagcGUCCCAGCGCCGc -3'
miRNA:   3'- gAAGcCGGu----CCGGU---UAGGGUUGUGGC- -5'
26870 5' -56.2 NC_005809.1 + 29102 0.75 0.181804
Target:  5'- -aUCGcCCAGGUCAugCCCGACACCGc -3'
miRNA:   3'- gaAGCcGGUCCGGUuaGGGUUGUGGC- -5'
26870 5' -56.2 NC_005809.1 + 14244 0.74 0.186847
Target:  5'- ---aGGCCaAGGCCAucgagUCCGACGCCGa -3'
miRNA:   3'- gaagCCGG-UCCGGUua---GGGUUGUGGC- -5'
26870 5' -56.2 NC_005809.1 + 719 0.74 0.202721
Target:  5'- -gUCGGCCAcGGCCAAgUCgAGCGCCu -3'
miRNA:   3'- gaAGCCGGU-CCGGUUaGGgUUGUGGc -5'
26870 5' -56.2 NC_005809.1 + 33490 0.73 0.237992
Target:  5'- --aCGGCCucgcGGCCAGUgaggggaugcacCCCGAUACCGu -3'
miRNA:   3'- gaaGCCGGu---CCGGUUA------------GGGUUGUGGC- -5'
26870 5' -56.2 NC_005809.1 + 19030 0.72 0.25748
Target:  5'- -gUCGGCCgAGGCCAucgaCCGcguGCGCCGc -3'
miRNA:   3'- gaAGCCGG-UCCGGUuag-GGU---UGUGGC- -5'
26870 5' -56.2 NC_005809.1 + 17243 0.72 0.263576
Target:  5'- --cCGGCCuGGaCAAUCCCGgcgacgaGCGCCGg -3'
miRNA:   3'- gaaGCCGGuCCgGUUAGGGU-------UGUGGC- -5'
26870 5' -56.2 NC_005809.1 + 19751 0.72 0.263576
Target:  5'- -gUCGGCagcgcggcgaaguCGGGCCAGUC-CGGCACCa -3'
miRNA:   3'- gaAGCCG-------------GUCCGGUUAGgGUUGUGGc -5'
26870 5' -56.2 NC_005809.1 + 24202 0.71 0.300343
Target:  5'- -aUCGGCaAGGCCAAcCUCGcCGCCGg -3'
miRNA:   3'- gaAGCCGgUCCGGUUaGGGUuGUGGC- -5'
26870 5' -56.2 NC_005809.1 + 14366 0.71 0.323761
Target:  5'- -gUCGGCguGGCCGA-CCUggacaaGGCGCCGc -3'
miRNA:   3'- gaAGCCGguCCGGUUaGGG------UUGUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.