miRNA display CGI


Results 61 - 78 of 78 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26870 5' -56.2 NC_005809.1 + 19030 0.72 0.25748
Target:  5'- -gUCGGCCgAGGCCAucgaCCGcguGCGCCGc -3'
miRNA:   3'- gaAGCCGG-UCCGGUuag-GGU---UGUGGC- -5'
26870 5' -56.2 NC_005809.1 + 33490 0.73 0.237992
Target:  5'- --aCGGCCucgcGGCCAGUgaggggaugcacCCCGAUACCGu -3'
miRNA:   3'- gaaGCCGGu---CCGGUUA------------GGGUUGUGGC- -5'
26870 5' -56.2 NC_005809.1 + 719 0.74 0.202721
Target:  5'- -gUCGGCCAcGGCCAAgUCgAGCGCCu -3'
miRNA:   3'- gaAGCCGGU-CCGGUUaGGgUUGUGGc -5'
26870 5' -56.2 NC_005809.1 + 14244 0.74 0.186847
Target:  5'- ---aGGCCaAGGCCAucgagUCCGACGCCGa -3'
miRNA:   3'- gaagCCGG-UCCGGUua---GGGUUGUGGC- -5'
26870 5' -56.2 NC_005809.1 + 29102 0.75 0.181804
Target:  5'- -aUCGcCCAGGUCAugCCCGACACCGc -3'
miRNA:   3'- gaAGCcGGUCCGGUuaGGGUUGUGGC- -5'
26870 5' -56.2 NC_005809.1 + 31290 0.75 0.167391
Target:  5'- uUUCcGCCuaccuGGCCGagcGUCCCAGCGCCGc -3'
miRNA:   3'- gAAGcCGGu----CCGGU---UAGGGUUGUGGC- -5'
26870 5' -56.2 NC_005809.1 + 24202 0.71 0.300343
Target:  5'- -aUCGGCaAGGCCAAcCUCGcCGCCGg -3'
miRNA:   3'- gaAGCCGgUCCGGUUaGGGUuGUGGC- -5'
26870 5' -56.2 NC_005809.1 + 14366 0.71 0.323761
Target:  5'- -gUCGGCguGGCCGA-CCUggacaaGGCGCCGc -3'
miRNA:   3'- gaAGCCGguCCGGUUaGGG------UUGUGGC- -5'
26870 5' -56.2 NC_005809.1 + 8882 0.7 0.331864
Target:  5'- gUUCGGCCuuGGC--GUCCCAcCACUGg -3'
miRNA:   3'- gAAGCCGGu-CCGguUAGGGUuGUGGC- -5'
26870 5' -56.2 NC_005809.1 + 19355 0.69 0.401949
Target:  5'- --gUGGCCgAGGCCGAggCCGAauuCACCGa -3'
miRNA:   3'- gaaGCCGG-UCCGGUUagGGUU---GUGGC- -5'
26870 5' -56.2 NC_005809.1 + 13912 0.69 0.401949
Target:  5'- --cUGGCgAGGCCG---CCGGCACCGa -3'
miRNA:   3'- gaaGCCGgUCCGGUuagGGUUGUGGC- -5'
26870 5' -56.2 NC_005809.1 + 23996 0.69 0.392688
Target:  5'- --aCGGCCAGGCCGucaCCgCGAgcgcggccucCACCGa -3'
miRNA:   3'- gaaGCCGGUCCGGUua-GG-GUU----------GUGGC- -5'
26870 5' -56.2 NC_005809.1 + 27886 0.69 0.392688
Target:  5'- aCUgcaGGCCGGGCUucaagcgCUCAACACCc -3'
miRNA:   3'- -GAag-CCGGUCCGGuua----GGGUUGUGGc -5'
26870 5' -56.2 NC_005809.1 + 9697 0.69 0.383567
Target:  5'- cCUUCcaGUCGGGCgcgaCAAUCUCGGCGCCGa -3'
miRNA:   3'- -GAAGc-CGGUCCG----GUUAGGGUUGUGGC- -5'
26870 5' -56.2 NC_005809.1 + 14415 0.69 0.383567
Target:  5'- --aCGGCguGGUCGAUCUgAcCACCGg -3'
miRNA:   3'- gaaGCCGguCCGGUUAGGgUuGUGGC- -5'
26870 5' -56.2 NC_005809.1 + 4798 0.69 0.383567
Target:  5'- gCUUUGGCgUAGGCCAgcuuguagagGUCggggCCGGCGCCGu -3'
miRNA:   3'- -GAAGCCG-GUCCGGU----------UAG----GGUUGUGGC- -5'
26870 5' -56.2 NC_005809.1 + 25533 0.7 0.340115
Target:  5'- aUUCGGCCAagaaggugcGGCUcAUCCCGuuCACCu -3'
miRNA:   3'- gAAGCCGGU---------CCGGuUAGGGUu-GUGGc -5'
26870 5' -56.2 NC_005809.1 + 24041 1.1 0.000478
Target:  5'- aCUUCGGCCAGGCCAAUCCCAACACCGg -3'
miRNA:   3'- -GAAGCCGGUCCGGUUAGGGUUGUGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.