Results 41 - 60 of 78 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26870 | 5' | -56.2 | NC_005809.1 | + | 14547 | 0.68 | 0.439358 |
Target: 5'- uCUUCGGCgAcGCCGAcaugaucggcuucUUCCAGCGCCu -3' miRNA: 3'- -GAAGCCGgUcCGGUU-------------AGGGUUGUGGc -5' |
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26870 | 5' | -56.2 | NC_005809.1 | + | 18567 | 0.66 | 0.592843 |
Target: 5'- -aUUGGCCGacgcgcccaccuucGCCAGUCUguGCGCCGa -3' miRNA: 3'- gaAGCCGGUc-------------CGGUUAGGguUGUGGC- -5' |
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26870 | 5' | -56.2 | NC_005809.1 | + | 14830 | 0.7 | 0.365751 |
Target: 5'- cCUUCGcCCAGGUCGAUgCCGuuggcggccaGCGCCGc -3' miRNA: 3'- -GAAGCcGGUCCGGUUAgGGU----------UGUGGC- -5' |
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26870 | 5' | -56.2 | NC_005809.1 | + | 24720 | 0.76 | 0.149771 |
Target: 5'- -gUCGGUCGGGCCGcUUCCAccGCGCCu -3' miRNA: 3'- gaAGCCGGUCCGGUuAGGGU--UGUGGc -5' |
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26870 | 5' | -56.2 | NC_005809.1 | + | 9791 | 0.66 | 0.599511 |
Target: 5'- --gCGGCCAGGUCGcgC---ACGCCGa -3' miRNA: 3'- gaaGCCGGUCCGGUuaGgguUGUGGC- -5' |
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26870 | 5' | -56.2 | NC_005809.1 | + | 32938 | 0.73 | 0.225697 |
Target: 5'- gUUCGGCCAGGgCGA-CCaCGGCugCGu -3' miRNA: 3'- gAAGCCGGUCCgGUUaGG-GUUGugGC- -5' |
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26870 | 5' | -56.2 | NC_005809.1 | + | 27350 | 0.73 | 0.244347 |
Target: 5'- ---aGGCCGGGCCGAccUCgCAGCACuCGu -3' miRNA: 3'- gaagCCGGUCCGGUU--AGgGUUGUG-GC- -5' |
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26870 | 5' | -56.2 | NC_005809.1 | + | 4613 | 0.69 | 0.383567 |
Target: 5'- -gUCaGCCAGGCCAAUguuggCCC-GCGCUGc -3' miRNA: 3'- gaAGcCGGUCCGGUUA-----GGGuUGUGGC- -5' |
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26870 | 5' | -56.2 | NC_005809.1 | + | 6233 | 0.69 | 0.392688 |
Target: 5'- cCUUCGGCCAGGg----CCUGcACGCCGg -3' miRNA: 3'- -GAAGCCGGUCCgguuaGGGU-UGUGGC- -5' |
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26870 | 5' | -56.2 | NC_005809.1 | + | 4751 | 0.66 | 0.572922 |
Target: 5'- -cUCGGCCAcGGCCGcgauguucucggcGUucgcccacacugcgCCCAgcACGCCGg -3' miRNA: 3'- gaAGCCGGU-CCGGU-------------UA--------------GGGU--UGUGGC- -5' |
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26870 | 5' | -56.2 | NC_005809.1 | + | 1195 | 0.66 | 0.566315 |
Target: 5'- -gUCGGCCGGGuuguuggaauaaCCGccCUCAugGCCGa -3' miRNA: 3'- gaAGCCGGUCC------------GGUuaGGGUugUGGC- -5' |
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26870 | 5' | -56.2 | NC_005809.1 | + | 40805 | 0.66 | 0.559728 |
Target: 5'- -aUCGGCCcgacgcgccaggcgcAGGCCGG--CCAugACCGc -3' miRNA: 3'- gaAGCCGG---------------UCCGGUUagGGUugUGGC- -5' |
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26870 | 5' | -56.2 | NC_005809.1 | + | 11852 | 0.67 | 0.53361 |
Target: 5'- -gUUGGCCuGGgCGAaCCCcGCGCCa -3' miRNA: 3'- gaAGCCGGuCCgGUUaGGGuUGUGGc -5' |
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26870 | 5' | -56.2 | NC_005809.1 | + | 19781 | 0.67 | 0.53361 |
Target: 5'- uCUUCacugauuGCCAGGCCGG-CCCGguagaACACCc -3' miRNA: 3'- -GAAGc------CGGUCCGGUUaGGGU-----UGUGGc -5' |
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26870 | 5' | -56.2 | NC_005809.1 | + | 29584 | 0.68 | 0.477645 |
Target: 5'- -gUCGGCCgcgcccaggcgcgcGGuuuGCCAGUugUCCAGCGCCGg -3' miRNA: 3'- gaAGCCGG--------------UC---CGGUUA--GGGUUGUGGC- -5' |
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26870 | 5' | -56.2 | NC_005809.1 | + | 34886 | 0.68 | 0.480739 |
Target: 5'- --cCGGCCgccgAGGUCAAgCCCGACgACCu -3' miRNA: 3'- gaaGCCGG----UCCGGUUaGGGUUG-UGGc -5' |
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26870 | 5' | -56.2 | NC_005809.1 | + | 13747 | 0.68 | 0.460306 |
Target: 5'- ---aGGUCGGGUUguuuuGUUCCAGCGCCGa -3' miRNA: 3'- gaagCCGGUCCGGu----UAGGGUUGUGGC- -5' |
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26870 | 5' | -56.2 | NC_005809.1 | + | 34946 | 0.68 | 0.460306 |
Target: 5'- ---aGGCCaAGGCCAcgugUCCGGCGCUGc -3' miRNA: 3'- gaagCCGG-UCCGGUua--GGGUUGUGGC- -5' |
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26870 | 5' | -56.2 | NC_005809.1 | + | 8828 | 0.69 | 0.411348 |
Target: 5'- -cUgGGUCGGGCCAG-CCgCAACGCgGg -3' miRNA: 3'- gaAgCCGGUCCGGUUaGG-GUUGUGgC- -5' |
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26870 | 5' | -56.2 | NC_005809.1 | + | 37369 | 0.69 | 0.401949 |
Target: 5'- --cCGGUugCAGGCCAGcaccaCCAGCACCa -3' miRNA: 3'- gaaGCCG--GUCCGGUUag---GGUUGUGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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