Results 1 - 20 of 60 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26871 | 5' | -48.7 | NC_005809.1 | + | 20083 | 0.66 | 0.956995 |
Target: 5'- aUGUCCaguuccUUGGCGAcuucggaaAAGGCGcCCAGCa -3' miRNA: 3'- -ACAGGcuu---GACUGCU--------UUUUGC-GGUCG- -5' |
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26871 | 5' | -48.7 | NC_005809.1 | + | 2195 | 0.66 | 0.956995 |
Target: 5'- --aCCGcAUuccagGGCGAGAAACGCCucGCg -3' miRNA: 3'- acaGGCuUGa----CUGCUUUUUGCGGu-CG- -5' |
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26871 | 5' | -48.7 | NC_005809.1 | + | 27967 | 0.66 | 0.956995 |
Target: 5'- aUGgaagCCGAcgcACUGcUGAAAAGCggaucggccGCCGGCa -3' miRNA: 3'- -ACa---GGCU---UGACuGCUUUUUG---------CGGUCG- -5' |
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26871 | 5' | -48.7 | NC_005809.1 | + | 27235 | 0.66 | 0.956995 |
Target: 5'- cGUCCGAACccuACGGcucacCGCCuGCa -3' miRNA: 3'- aCAGGCUUGac-UGCUuuuu-GCGGuCG- -5' |
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26871 | 5' | -48.7 | NC_005809.1 | + | 130 | 0.66 | 0.956995 |
Target: 5'- uUGUCCcaAGCUacGGCGu--GGCGCCAGg -3' miRNA: 3'- -ACAGGc-UUGA--CUGCuuuUUGCGGUCg -5' |
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26871 | 5' | -48.7 | NC_005809.1 | + | 37931 | 0.66 | 0.952546 |
Target: 5'- cUGUCCGAucUUGcCGAcccuGCGgCAGCg -3' miRNA: 3'- -ACAGGCUu-GACuGCUuuu-UGCgGUCG- -5' |
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26871 | 5' | -48.7 | NC_005809.1 | + | 41081 | 0.66 | 0.947797 |
Target: 5'- aUGUCCGAccagcACUG-CGAu--ACcCCGGCc -3' miRNA: 3'- -ACAGGCU-----UGACuGCUuuuUGcGGUCG- -5' |
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26871 | 5' | -48.7 | NC_005809.1 | + | 22812 | 0.66 | 0.946811 |
Target: 5'- gGUgCCGGACUGGCccgacuuCGCCGcGCu -3' miRNA: 3'- aCA-GGCUUGACUGcuuuuu-GCGGU-CG- -5' |
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26871 | 5' | -48.7 | NC_005809.1 | + | 329 | 0.66 | 0.942745 |
Target: 5'- cGUCa-GGCUGGCGGuggcguCGCgCAGCa -3' miRNA: 3'- aCAGgcUUGACUGCUuuuu--GCG-GUCG- -5' |
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26871 | 5' | -48.7 | NC_005809.1 | + | 13747 | 0.66 | 0.942745 |
Target: 5'- aGUCCGGccGCaacccGACGAcggcGCGCUGGCu -3' miRNA: 3'- aCAGGCU--UGa----CUGCUuuu-UGCGGUCG- -5' |
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26871 | 5' | -48.7 | NC_005809.1 | + | 7889 | 0.66 | 0.937384 |
Target: 5'- cGUCCaGGGC-GGCGcgugcguAGAuCGCCAGCu -3' miRNA: 3'- aCAGG-CUUGaCUGCu------UUUuGCGGUCG- -5' |
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26871 | 5' | -48.7 | NC_005809.1 | + | 15724 | 0.66 | 0.937384 |
Target: 5'- --aUCGAACUGGCGc--GAgGCCAuGCg -3' miRNA: 3'- acaGGCUUGACUGCuuuUUgCGGU-CG- -5' |
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26871 | 5' | -48.7 | NC_005809.1 | + | 37742 | 0.67 | 0.931713 |
Target: 5'- -uUCCguGAAUUcGACGAc-GGCGCCGGCc -3' miRNA: 3'- acAGG--CUUGA-CUGCUuuUUGCGGUCG- -5' |
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26871 | 5' | -48.7 | NC_005809.1 | + | 20414 | 0.67 | 0.931713 |
Target: 5'- aGUUCagggcaGAGCgUGugGAuuuGCGCCAGUa -3' miRNA: 3'- aCAGG------CUUG-ACugCUuuuUGCGGUCG- -5' |
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26871 | 5' | -48.7 | NC_005809.1 | + | 13339 | 0.67 | 0.931713 |
Target: 5'- aGUggaCGGACUucuucGGCGGAcuGGACGCCAuGCg -3' miRNA: 3'- aCAg--GCUUGA-----CUGCUU--UUUGCGGU-CG- -5' |
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26871 | 5' | -48.7 | NC_005809.1 | + | 23990 | 0.67 | 0.931129 |
Target: 5'- -aUUCGGcgcacagACUGGCGAAGGugggcGCGUCGGCc -3' miRNA: 3'- acAGGCU-------UGACUGCUUUU-----UGCGGUCG- -5' |
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26871 | 5' | -48.7 | NC_005809.1 | + | 38551 | 0.67 | 0.92573 |
Target: 5'- --cCCGcgcGGCaUGACGcuGGugGCCGGCg -3' miRNA: 3'- acaGGC---UUG-ACUGCuuUUugCGGUCG- -5' |
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26871 | 5' | -48.7 | NC_005809.1 | + | 19603 | 0.67 | 0.92573 |
Target: 5'- -aUCCGAccgGCUGACGcAGGAAUaCCAGa -3' miRNA: 3'- acAGGCU---UGACUGC-UUUUUGcGGUCg -5' |
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26871 | 5' | -48.7 | NC_005809.1 | + | 23578 | 0.67 | 0.92573 |
Target: 5'- gGUgCGGGCggggGGCGAcGAugGCCGucauGCg -3' miRNA: 3'- aCAgGCUUGa---CUGCUuUUugCGGU----CG- -5' |
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26871 | 5' | -48.7 | NC_005809.1 | + | 15130 | 0.67 | 0.92573 |
Target: 5'- gGcCCGAccccauGCUGGCGGcgGAuGCGCCcagGGCg -3' miRNA: 3'- aCaGGCU------UGACUGCU--UUuUGCGG---UCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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