miRNA display CGI


Results 21 - 40 of 46 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26872 3' -57.9 NC_005809.1 + 23504 0.67 0.413642
Target:  5'- --cGCguGACCUcGGCGAggaCACGCUGa -3'
miRNA:   3'- acuUGguCUGGGuCCGCUg--GUGCGAC- -5'
26872 3' -57.9 NC_005809.1 + 36653 0.67 0.413642
Target:  5'- aUGAcaACCAGGacuccaauCCC-GGCGgcacacucACCACGCUGg -3'
miRNA:   3'- -ACU--UGGUCU--------GGGuCCGC--------UGGUGCGAC- -5'
26872 3' -57.9 NC_005809.1 + 24272 0.67 0.404289
Target:  5'- uUGAGCguGGCgCCGGacaGUGACCACGUg- -3'
miRNA:   3'- -ACUUGguCUG-GGUC---CGCUGGUGCGac -5'
26872 3' -57.9 NC_005809.1 + 23726 0.67 0.404289
Target:  5'- cGGGCCAGugCCucgguGGCGcgcagcagcGCCAUGCc- -3'
miRNA:   3'- aCUUGGUCugGGu----CCGC---------UGGUGCGac -5'
26872 3' -57.9 NC_005809.1 + 13489 0.67 0.404289
Target:  5'- cGGGCCuGACCUcGGCGcccgaggaugACC-CGCUGa -3'
miRNA:   3'- aCUUGGuCUGGGuCCGC----------UGGuGCGAC- -5'
26872 3' -57.9 NC_005809.1 + 17902 0.68 0.395071
Target:  5'- gUGGACguGGCCCGcGGCGGgCGCGaCa- -3'
miRNA:   3'- -ACUUGguCUGGGU-CCGCUgGUGC-Gac -5'
26872 3' -57.9 NC_005809.1 + 30546 0.68 0.395071
Target:  5'- cUGGGCaAGACCUcgccGGCcacGGCCGCGCUGc -3'
miRNA:   3'- -ACUUGgUCUGGGu---CCG---CUGGUGCGAC- -5'
26872 3' -57.9 NC_005809.1 + 39385 0.68 0.394156
Target:  5'- gUGAGCaagcuguacgcagCGGACgCCGGGCuuGCCAUGCUGc -3'
miRNA:   3'- -ACUUG-------------GUCUG-GGUCCGc-UGGUGCGAC- -5'
26872 3' -57.9 NC_005809.1 + 2001 0.68 0.385989
Target:  5'- cUGAuCUugAGGCCCAGGCG-CU-CGCUGg -3'
miRNA:   3'- -ACUuGG--UCUGGGUCCGCuGGuGCGAC- -5'
26872 3' -57.9 NC_005809.1 + 16581 0.68 0.377047
Target:  5'- cGAcgcGCCGGA-CgAGGcCGACCACGCg- -3'
miRNA:   3'- aCU---UGGUCUgGgUCC-GCUGGUGCGac -5'
26872 3' -57.9 NC_005809.1 + 40812 0.68 0.377047
Target:  5'- cGAcgcGCCAGGCgCAGGCcGGCCAUGa-- -3'
miRNA:   3'- aCU---UGGUCUGgGUCCG-CUGGUGCgac -5'
26872 3' -57.9 NC_005809.1 + 2659 0.68 0.368245
Target:  5'- aGGGCCAGcggucGCCCAGGUGuucgaucaGCCACGg-- -3'
miRNA:   3'- aCUUGGUC-----UGGGUCCGC--------UGGUGCgac -5'
26872 3' -57.9 NC_005809.1 + 38169 0.68 0.368245
Target:  5'- cGAcuGCCgcacgcucaAGGCCCGGcGCGACgGCGcCUGg -3'
miRNA:   3'- aCU--UGG---------UCUGGGUC-CGCUGgUGC-GAC- -5'
26872 3' -57.9 NC_005809.1 + 16792 0.68 0.363032
Target:  5'- aUGGucGCCAGuugccaguuggucgcGCCCAGGCGGCgcaguuCACGCg- -3'
miRNA:   3'- -ACU--UGGUC---------------UGGGUCCGCUG------GUGCGac -5'
26872 3' -57.9 NC_005809.1 + 17485 0.68 0.359586
Target:  5'- ---cCCAcGGCgCCGGGCGcGCUGCGCUGg -3'
miRNA:   3'- acuuGGU-CUG-GGUCCGC-UGGUGCGAC- -5'
26872 3' -57.9 NC_005809.1 + 20793 0.69 0.341868
Target:  5'- aGAACCAggacaucagcaccGugCCGGGCGGCCuguccuauguggACGCg- -3'
miRNA:   3'- aCUUGGU-------------CugGGUCCGCUGG------------UGCGac -5'
26872 3' -57.9 NC_005809.1 + 2821 0.69 0.33447
Target:  5'- cGGGCCAGGUgCucGCGGCCACGCg- -3'
miRNA:   3'- aCUUGGUCUGgGucCGCUGGUGCGac -5'
26872 3' -57.9 NC_005809.1 + 19770 0.69 0.326388
Target:  5'- cGGGCCAG-UCC-GGC-ACCAUGCUGa -3'
miRNA:   3'- aCUUGGUCuGGGuCCGcUGGUGCGAC- -5'
26872 3' -57.9 NC_005809.1 + 8533 0.7 0.295518
Target:  5'- cGAACUu-GCCCAGGUaucgcaGGCCGCGCUc -3'
miRNA:   3'- aCUUGGucUGGGUCCG------CUGGUGCGAc -5'
26872 3' -57.9 NC_005809.1 + 21424 0.7 0.266969
Target:  5'- uUGAACCAGGgCgCGgacacGGCGGCCAaGCUGg -3'
miRNA:   3'- -ACUUGGUCUgG-GU-----CCGCUGGUgCGAC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.