miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26873 3' -46 NC_005809.1 + 18672 0.66 0.994288
Target:  5'- cAugGAAGCCGcggGCGuggcgcacuUCCUUGGCGu -3'
miRNA:   3'- cUugCUUUGGU---UGCuuu------AGGAGCUGC- -5'
26873 3' -46 NC_005809.1 + 33747 0.66 0.993271
Target:  5'- aGGACGGuaucaaGGCCGACaccAAGUaccgCCUCGACGa -3'
miRNA:   3'- -CUUGCU------UUGGUUGc--UUUA----GGAGCUGC- -5'
26873 3' -46 NC_005809.1 + 29397 0.66 0.992115
Target:  5'- -cGCGGuaGGCCAGCaGAAUCUUgGGCGc -3'
miRNA:   3'- cuUGCU--UUGGUUGcUUUAGGAgCUGC- -5'
26873 3' -46 NC_005809.1 + 13652 0.66 0.992115
Target:  5'- cGGCGAGGCCcuggcuuuguggGACGAGugGUCggCGACGg -3'
miRNA:   3'- cUUGCUUUGG------------UUGCUU--UAGgaGCUGC- -5'
26873 3' -46 NC_005809.1 + 3392 0.66 0.990806
Target:  5'- cGAugGGuuCCAuCGGuugCCUUGGCGg -3'
miRNA:   3'- -CUugCUuuGGUuGCUuuaGGAGCUGC- -5'
26873 3' -46 NC_005809.1 + 7349 0.66 0.989332
Target:  5'- uGAGCGcgGCCu-CGA---CCUCGGCGu -3'
miRNA:   3'- -CUUGCuuUGGuuGCUuuaGGAGCUGC- -5'
26873 3' -46 NC_005809.1 + 35058 0.66 0.989332
Target:  5'- -cACGGuagaCAACGccAUCCUCGGCa -3'
miRNA:   3'- cuUGCUuug-GUUGCuuUAGGAGCUGc -5'
26873 3' -46 NC_005809.1 + 9742 0.66 0.989175
Target:  5'- aGGCGAAGCCGuuGCGGcugguguAGUCCgacCGGCa -3'
miRNA:   3'- cUUGCUUUGGU--UGCU-------UUAGGa--GCUGc -5'
26873 3' -46 NC_005809.1 + 19993 0.67 0.988363
Target:  5'- aGAuCGcAACCGcgGCGAGAagcggcacaacaacaUCCUCGACa -3'
miRNA:   3'- -CUuGCuUUGGU--UGCUUU---------------AGGAGCUGc -5'
26873 3' -46 NC_005809.1 + 9728 0.67 0.98768
Target:  5'- --uCGAAGCCGcggGCGAAcUgCUCGugGu -3'
miRNA:   3'- cuuGCUUUGGU---UGCUUuAgGAGCugC- -5'
26873 3' -46 NC_005809.1 + 19055 0.67 0.985838
Target:  5'- cGGCGGcgucGAUCAGCGu-GUCCUCGcCGa -3'
miRNA:   3'- cUUGCU----UUGGUUGCuuUAGGAGCuGC- -5'
26873 3' -46 NC_005809.1 + 32264 0.67 0.985642
Target:  5'- uGGCGAAACUGGCGAAguggcaccccgagGUgCUgGACGa -3'
miRNA:   3'- cUUGCUUUGGUUGCUU-------------UAgGAgCUGC- -5'
26873 3' -46 NC_005809.1 + 34392 0.67 0.983791
Target:  5'- cGAACGGGcaggacGCCAGCGccuUCCUgGGCc -3'
miRNA:   3'- -CUUGCUU------UGGUUGCuuuAGGAgCUGc -5'
26873 3' -46 NC_005809.1 + 4742 0.67 0.981289
Target:  5'- -cGCGAuguucucGGCCAcggccGCGAuGUUCUCGGCGu -3'
miRNA:   3'- cuUGCU-------UUGGU-----UGCUuUAGGAGCUGC- -5'
26873 3' -46 NC_005809.1 + 24305 0.68 0.979035
Target:  5'- uGACG--GCCGGC-AAGUUCUCGGCGc -3'
miRNA:   3'- cUUGCuuUGGUUGcUUUAGGAGCUGC- -5'
26873 3' -46 NC_005809.1 + 37354 0.68 0.976302
Target:  5'- uGGCGu--CCAAC---AUCCUCGACGu -3'
miRNA:   3'- cUUGCuuuGGUUGcuuUAGGAGCUGC- -5'
26873 3' -46 NC_005809.1 + 27492 0.68 0.976302
Target:  5'- -cGCGAGgauGCCGGCGg---CCUCGGCc -3'
miRNA:   3'- cuUGCUU---UGGUUGCuuuaGGAGCUGc -5'
26873 3' -46 NC_005809.1 + 7563 0.68 0.975434
Target:  5'- cGGCGccACCGgcuuggacacguccACGAAGUCgUCGGCGa -3'
miRNA:   3'- cUUGCuuUGGU--------------UGCUUUAGgAGCUGC- -5'
26873 3' -46 NC_005809.1 + 15083 0.68 0.973317
Target:  5'- --cCGAGGCCGcCGgcAUCCUCG-CGu -3'
miRNA:   3'- cuuGCUUUGGUuGCuuUAGGAGCuGC- -5'
26873 3' -46 NC_005809.1 + 13840 0.68 0.970068
Target:  5'- uGGACGAuGCCAagGCGcucAUCCUCG-CGu -3'
miRNA:   3'- -CUUGCUuUGGU--UGCuu-UAGGAGCuGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.