miRNA display CGI


Results 21 - 40 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26874 3' -53.5 NC_005809.1 + 35412 0.67 0.642334
Target:  5'- cAGCGcguCgGGCCUGGGCuucaacgucaugagCGCCCu -3'
miRNA:   3'- -UUGUuuuGgCCGGACCCGuua-----------GUGGG- -5'
26874 3' -53.5 NC_005809.1 + 38491 0.67 0.634293
Target:  5'- cACcuGGCCGGCCUGauGGCuaccAAUCcCCCc -3'
miRNA:   3'- uUGuuUUGGCCGGAC--CCG----UUAGuGGG- -5'
26874 3' -53.5 NC_005809.1 + 12905 0.67 0.622803
Target:  5'- cACAcgGCCGcGCCcugcUGGGCAacggcuaccucAUCAUCCc -3'
miRNA:   3'- uUGUuuUGGC-CGG----ACCCGU-----------UAGUGGG- -5'
26874 3' -53.5 NC_005809.1 + 4092 0.67 0.622803
Target:  5'- ---cAGGCCGGCCaggUGGGCGG-CGCUg -3'
miRNA:   3'- uuguUUUGGCCGG---ACCCGUUaGUGGg -5'
26874 3' -53.5 NC_005809.1 + 31659 0.67 0.622803
Target:  5'- uGC-AAACCGGC--GGGCAGgUCGCCa -3'
miRNA:   3'- uUGuUUUGGCCGgaCCCGUU-AGUGGg -5'
26874 3' -53.5 NC_005809.1 + 19788 0.68 0.601007
Target:  5'- uGCu-GACCGGCCcgcaGGGCGuugaccaaucggcccUCACCCu -3'
miRNA:   3'- uUGuuUUGGCCGGa---CCCGUu--------------AGUGGG- -5'
26874 3' -53.5 NC_005809.1 + 24570 0.68 0.588431
Target:  5'- uGGCGAGGCCGGCCacggucGGGCcGUCcggcguguccuuGCCg -3'
miRNA:   3'- -UUGUUUUGGCCGGa-----CCCGuUAG------------UGGg -5'
26874 3' -53.5 NC_005809.1 + 13100 0.68 0.577041
Target:  5'- cGCGGAACUGGCCgc-GCGcuucGUCGCCUg -3'
miRNA:   3'- uUGUUUUGGCCGGaccCGU----UAGUGGG- -5'
26874 3' -53.5 NC_005809.1 + 18879 0.68 0.554417
Target:  5'- gGGCGcuACCGGCCUGuacguguccGGCccgaccgagGGUCGCCUg -3'
miRNA:   3'- -UUGUuuUGGCCGGAC---------CCG---------UUAGUGGG- -5'
26874 3' -53.5 NC_005809.1 + 29387 0.68 0.554417
Target:  5'- uACAAcGCCGGCCaaGGGC----GCCCa -3'
miRNA:   3'- uUGUUuUGGCCGGa-CCCGuuagUGGG- -5'
26874 3' -53.5 NC_005809.1 + 2043 0.69 0.543201
Target:  5'- cGAUAGAACaCGGCgCgcaauuccucgGGGUcGUCGCCCa -3'
miRNA:   3'- -UUGUUUUG-GCCG-Ga----------CCCGuUAGUGGG- -5'
26874 3' -53.5 NC_005809.1 + 37691 0.69 0.532062
Target:  5'- aAACGAGGCCGccgucgccGCgCUGGGCAAcgACCUg -3'
miRNA:   3'- -UUGUUUUGGC--------CG-GACCCGUUagUGGG- -5'
26874 3' -53.5 NC_005809.1 + 41261 0.69 0.521005
Target:  5'- ------gUCGGCCUGguGGCcGUCGCCCu -3'
miRNA:   3'- uuguuuuGGCCGGAC--CCGuUAGUGGG- -5'
26874 3' -53.5 NC_005809.1 + 22360 0.69 0.51004
Target:  5'- cAACA--GCCGGCCgcGGGCg--CugCCa -3'
miRNA:   3'- -UUGUuuUGGCCGGa-CCCGuuaGugGG- -5'
26874 3' -53.5 NC_005809.1 + 31590 0.69 0.506769
Target:  5'- uGCAAu-CCGGCCUGGccgaacagguggccGCAGUguCCCc -3'
miRNA:   3'- uUGUUuuGGCCGGACC--------------CGUUAguGGG- -5'
26874 3' -53.5 NC_005809.1 + 22479 0.7 0.477754
Target:  5'- aGGCGGAACCaggggcGGgCUGGGCuGGUCauGCCCg -3'
miRNA:   3'- -UUGUUUUGG------CCgGACCCG-UUAG--UGGG- -5'
26874 3' -53.5 NC_005809.1 + 40149 0.7 0.467217
Target:  5'- -uCGAGGCCGGCCUGcuGCcGUaCACCUa -3'
miRNA:   3'- uuGUUUUGGCCGGACc-CGuUA-GUGGG- -5'
26874 3' -53.5 NC_005809.1 + 22789 0.7 0.456801
Target:  5'- uACcGGGCCGGCCU-GGCAAUCAgUg -3'
miRNA:   3'- uUGuUUUGGCCGGAcCCGUUAGUgGg -5'
26874 3' -53.5 NC_005809.1 + 2361 0.7 0.456801
Target:  5'- cGCAAu-UCGGCCUGcacguGGCAGaCGCCCg -3'
miRNA:   3'- uUGUUuuGGCCGGAC-----CCGUUaGUGGG- -5'
26874 3' -53.5 NC_005809.1 + 41855 0.7 0.44651
Target:  5'- cGGCAAAGCCGccccuauCCUGGGCGGUaucuugggcgGCCCg -3'
miRNA:   3'- -UUGUUUUGGCc------GGACCCGUUAg---------UGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.