Results 21 - 40 of 62 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26875 | 5' | -51.5 | NC_005809.1 | + | 31980 | 0.67 | 0.788298 |
Target: 5'- uGCGGUG-CAGGCUGCGc----GCCUg -3' miRNA: 3'- cCGCCGCuGUUCGACGUucuuuUGGA- -5' |
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26875 | 5' | -51.5 | NC_005809.1 | + | 4825 | 0.67 | 0.777845 |
Target: 5'- uGGcCGGCGACAGGUcGCcguAGucgauGACCa -3' miRNA: 3'- -CC-GCCGCUGUUCGaCGu--UCuu---UUGGa -5' |
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26875 | 5' | -51.5 | NC_005809.1 | + | 34192 | 0.67 | 0.767225 |
Target: 5'- gGGCGGCGAUucucgaagauucGAGCgcggcggcGCAGGAGGuACUg -3' miRNA: 3'- -CCGCCGCUG------------UUCGa-------CGUUCUUU-UGGa -5' |
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26875 | 5' | -51.5 | NC_005809.1 | + | 10866 | 0.68 | 0.723334 |
Target: 5'- cGCGcGCGGCGGGCUGguCAGGcgGugCUg -3' miRNA: 3'- cCGC-CGCUGUUCGAC--GUUCuuUugGA- -5' |
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26875 | 5' | -51.5 | NC_005809.1 | + | 11421 | 0.68 | 0.712076 |
Target: 5'- aGCGGCGAgCcGGCgUGCAGGuc-GCCg -3' miRNA: 3'- cCGCCGCU-GuUCG-ACGUUCuuuUGGa -5' |
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26875 | 5' | -51.5 | NC_005809.1 | + | 24588 | 0.68 | 0.700731 |
Target: 5'- cGGCGGCGACuuGgUGUAAcGAGucuCCUu -3' miRNA: 3'- -CCGCCGCUGuuCgACGUU-CUUuu-GGA- -5' |
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26875 | 5' | -51.5 | NC_005809.1 | + | 31340 | 0.68 | 0.700731 |
Target: 5'- cGCGGCGACAuucaAGCaguaccUGgAAGAAGACg- -3' miRNA: 3'- cCGCCGCUGU----UCG------ACgUUCUUUUGga -5' |
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26875 | 5' | -51.5 | NC_005809.1 | + | 18311 | 0.68 | 0.689311 |
Target: 5'- cGGCgccacgcucaaGGUGGCAAGCcGCGAGGAcAUCa -3' miRNA: 3'- -CCG-----------CCGCUGUUCGaCGUUCUUuUGGa -5' |
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26875 | 5' | -51.5 | NC_005809.1 | + | 14869 | 0.68 | 0.689311 |
Target: 5'- cGGCGGCGAgccGCUGCcGGcgcgcGGCCUg -3' miRNA: 3'- -CCGCCGCUguuCGACGuUCuu---UUGGA- -5' |
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26875 | 5' | -51.5 | NC_005809.1 | + | 10222 | 0.68 | 0.689311 |
Target: 5'- cGGCGGCGACcgcagcgaccuGGGCgGCGguugucGGGAcGCCg -3' miRNA: 3'- -CCGCCGCUG-----------UUCGaCGU------UCUUuUGGa -5' |
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26875 | 5' | -51.5 | NC_005809.1 | + | 23652 | 0.68 | 0.689311 |
Target: 5'- cGGCGGCGggcaGCAA-CUGCAccAGgcGACCc -3' miRNA: 3'- -CCGCCGC----UGUUcGACGU--UCuuUUGGa -5' |
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26875 | 5' | -51.5 | NC_005809.1 | + | 25629 | 0.68 | 0.689311 |
Target: 5'- -aCGGCGGCAcGCUGCuGGAcggcGCCg -3' miRNA: 3'- ccGCCGCUGUuCGACGuUCUuu--UGGa -5' |
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26875 | 5' | -51.5 | NC_005809.1 | + | 14830 | 0.68 | 0.689311 |
Target: 5'- --gGGCaGCGAGUUGCGcGAGGGCCUc -3' miRNA: 3'- ccgCCGcUGUUCGACGUuCUUUUGGA- -5' |
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26875 | 5' | -51.5 | NC_005809.1 | + | 38692 | 0.69 | 0.677831 |
Target: 5'- cGGCGGCGACG-GCaGCGc---GGCCUa -3' miRNA: 3'- -CCGCCGCUGUuCGaCGUucuuUUGGA- -5' |
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26875 | 5' | -51.5 | NC_005809.1 | + | 6642 | 0.69 | 0.654737 |
Target: 5'- cGCGGacaCGuACAGGUUGCcGGGGAAGCCg -3' miRNA: 3'- cCGCC---GC-UGUUCGACG-UUCUUUUGGa -5' |
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26875 | 5' | -51.5 | NC_005809.1 | + | 18818 | 0.69 | 0.647787 |
Target: 5'- uGGCGGCG-CAggaAGCUGCgaAuuuugcgcggcauguAGAAGGCCg -3' miRNA: 3'- -CCGCCGCuGU---UCGACG--U---------------UCUUUUGGa -5' |
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26875 | 5' | -51.5 | NC_005809.1 | + | 42228 | 0.69 | 0.64315 |
Target: 5'- uGGCGGaCGGCcuGCUGCGcGAc-GCCa -3' miRNA: 3'- -CCGCC-GCUGuuCGACGUuCUuuUGGa -5' |
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26875 | 5' | -51.5 | NC_005809.1 | + | 42399 | 0.69 | 0.64315 |
Target: 5'- cGGUGcccaGCGACAccggGGCgcauccgccUGCGGGGAAGCCUg -3' miRNA: 3'- -CCGC----CGCUGU----UCG---------ACGUUCUUUUGGA- -5' |
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26875 | 5' | -51.5 | NC_005809.1 | + | 37408 | 0.69 | 0.64199 |
Target: 5'- aGGCGGUGGCAGGCaaUGCGGcAAAcaucaacgucguaGCCg -3' miRNA: 3'- -CCGCCGCUGUUCG--ACGUUcUUU-------------UGGa -5' |
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26875 | 5' | -51.5 | NC_005809.1 | + | 9342 | 0.7 | 0.619953 |
Target: 5'- gGGCGGCGGCAuccuuuugcAGUUGCuugauGAugcGGCCg -3' miRNA: 3'- -CCGCCGCUGU---------UCGACGuu---CUu--UUGGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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