Results 1 - 20 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26876 | 3' | -50.6 | NC_005809.1 | + | 34790 | 0.66 | 0.888611 |
Target: 5'- gGCGGCgaagGGUGgaCGcCGGcgcagaucgcgccGGUGCUGCa -3' miRNA: 3'- -CGUUGa---CCACgaGCuGUU-------------CUACGACG- -5' |
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26876 | 3' | -50.6 | NC_005809.1 | + | 19481 | 0.66 | 0.873378 |
Target: 5'- uGCGcCaGGUGCcggUgGGCAGGccGCUGCg -3' miRNA: 3'- -CGUuGaCCACG---AgCUGUUCuaCGACG- -5' |
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26876 | 3' | -50.6 | NC_005809.1 | + | 14411 | 0.66 | 0.873378 |
Target: 5'- gGCAACgGcGUGgUCGaucugaccaccgGCAAGcUGCUGCc -3' miRNA: 3'- -CGUUGaC-CACgAGC------------UGUUCuACGACG- -5' |
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26876 | 3' | -50.6 | NC_005809.1 | + | 13723 | 0.66 | 0.864951 |
Target: 5'- cGCGgcGCUGGgacaGCuUCGGCAAGuccgGCcGCa -3' miRNA: 3'- -CGU--UGACCa---CG-AGCUGUUCua--CGaCG- -5' |
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26876 | 3' | -50.6 | NC_005809.1 | + | 5191 | 0.66 | 0.847292 |
Target: 5'- uGUAuuuGCUGGUGCUgGu---GGUGCUGg -3' miRNA: 3'- -CGU---UGACCACGAgCuguuCUACGACg -5' |
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26876 | 3' | -50.6 | NC_005809.1 | + | 5474 | 0.66 | 0.847292 |
Target: 5'- gGCGGCgaGGUGUUgcCGAUggGGgguacggcgaUGCUGCc -3' miRNA: 3'- -CGUUGa-CCACGA--GCUGuuCU----------ACGACG- -5' |
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26876 | 3' | -50.6 | NC_005809.1 | + | 32929 | 0.67 | 0.818932 |
Target: 5'- aCGGCUGcUGUUCGGCcAGGgcgaccacgGCUGCg -3' miRNA: 3'- cGUUGACcACGAGCUGuUCUa--------CGACG- -5' |
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26876 | 3' | -50.6 | NC_005809.1 | + | 32711 | 0.67 | 0.818932 |
Target: 5'- aGCAGCgcgccGGUGCcacgcucaUCGACGccgaaaccgAGGUGCaGCg -3' miRNA: 3'- -CGUUGa----CCACG--------AGCUGU---------UCUACGaCG- -5' |
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26876 | 3' | -50.6 | NC_005809.1 | + | 21454 | 0.67 | 0.809024 |
Target: 5'- uGCGGCgGGgg--CGGCAGGAUGUUGg -3' miRNA: 3'- -CGUUGaCCacgaGCUGUUCUACGACg -5' |
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26876 | 3' | -50.6 | NC_005809.1 | + | 3282 | 0.67 | 0.809024 |
Target: 5'- cGCAACgccGUGCUUccuCGGGAUGCUuuGCg -3' miRNA: 3'- -CGUUGac-CACGAGcu-GUUCUACGA--CG- -5' |
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26876 | 3' | -50.6 | NC_005809.1 | + | 25188 | 0.67 | 0.798908 |
Target: 5'- -aAGC-GGUGCgUCGGCGcGAUGCagGCa -3' miRNA: 3'- cgUUGaCCACG-AGCUGUuCUACGa-CG- -5' |
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26876 | 3' | -50.6 | NC_005809.1 | + | 40359 | 0.67 | 0.798908 |
Target: 5'- uGCGcgUGGUGCUaccCGACGAGG-GCgucgGCa -3' miRNA: 3'- -CGUugACCACGA---GCUGUUCUaCGa---CG- -5' |
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26876 | 3' | -50.6 | NC_005809.1 | + | 38720 | 0.67 | 0.798908 |
Target: 5'- -aAGCUGGg---CGGCGAGGUGC-GCa -3' miRNA: 3'- cgUUGACCacgaGCUGUUCUACGaCG- -5' |
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26876 | 3' | -50.6 | NC_005809.1 | + | 5359 | 0.68 | 0.788596 |
Target: 5'- gGCGACaGccaacaUGCUCGACAGGugcGUGCUGa -3' miRNA: 3'- -CGUUGaCc-----ACGAGCUGUUC---UACGACg -5' |
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26876 | 3' | -50.6 | NC_005809.1 | + | 10290 | 0.68 | 0.788596 |
Target: 5'- cGCAacgcGCUGGUGUUUucCuGGAUuGCUGCu -3' miRNA: 3'- -CGU----UGACCACGAGcuGuUCUA-CGACG- -5' |
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26876 | 3' | -50.6 | NC_005809.1 | + | 20400 | 0.69 | 0.734565 |
Target: 5'- cGCAGaUGGUGCgcgaauUCGGCAAGGacaagUGCaGCa -3' miRNA: 3'- -CGUUgACCACG------AGCUGUUCU-----ACGaCG- -5' |
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26876 | 3' | -50.6 | NC_005809.1 | + | 35334 | 0.69 | 0.730096 |
Target: 5'- gGCGGCcgacaucgccgagGGUGagcgCGGCGcAGAUGCUGCc -3' miRNA: 3'- -CGUUGa------------CCACga--GCUGU-UCUACGACG- -5' |
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26876 | 3' | -50.6 | NC_005809.1 | + | 10897 | 0.69 | 0.723359 |
Target: 5'- aGCAguuACUGGUGCUUGugGccGGUGUagGCc -3' miRNA: 3'- -CGU---UGACCACGAGCugUu-CUACGa-CG- -5' |
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26876 | 3' | -50.6 | NC_005809.1 | + | 39510 | 0.69 | 0.700655 |
Target: 5'- uGCGGCUcgGGcGCUUGAC---GUGCUGCu -3' miRNA: 3'- -CGUUGA--CCaCGAGCUGuucUACGACG- -5' |
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26876 | 3' | -50.6 | NC_005809.1 | + | 20298 | 0.7 | 0.666071 |
Target: 5'- aGUAGCgGGuUGCUCGGCGGccgGUUGCg -3' miRNA: 3'- -CGUUGaCC-ACGAGCUGUUcuaCGACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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