miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26876 3' -50.6 NC_005809.1 + 22529 1.14 0.000881
Target:  5'- cGCAACUGGUGCUCGACAAGAUGCUGCc -3'
miRNA:   3'- -CGUUGACCACGAGCUGUUCUACGACG- -5'
26876 3' -50.6 NC_005809.1 + 32526 0.78 0.244947
Target:  5'- uGCAgGCUGGUGaugcCGGcCAGGAUGCUGCc -3'
miRNA:   3'- -CGU-UGACCACga--GCU-GUUCUACGACG- -5'
26876 3' -50.6 NC_005809.1 + 8594 0.77 0.280486
Target:  5'- uGCGGcCUGGUGCUgGAUAAGcugGUUGCg -3'
miRNA:   3'- -CGUU-GACCACGAgCUGUUCua-CGACG- -5'
26876 3' -50.6 NC_005809.1 + 32997 0.74 0.451669
Target:  5'- cGCAAC--GUGUUCGACcGGAUGCUcGCc -3'
miRNA:   3'- -CGUUGacCACGAGCUGuUCUACGA-CG- -5'
26876 3' -50.6 NC_005809.1 + 31471 0.72 0.527643
Target:  5'- cCAAUUGGccgcaGC-CGACAAGGUGCUcGCg -3'
miRNA:   3'- cGUUGACCa----CGaGCUGUUCUACGA-CG- -5'
26876 3' -50.6 NC_005809.1 + 15203 0.71 0.57315
Target:  5'- --uGCUGGccgaaugGCUgGACGAG-UGCUGCg -3'
miRNA:   3'- cguUGACCa------CGAgCUGUUCuACGACG- -5'
26876 3' -50.6 NC_005809.1 + 20298 0.7 0.666071
Target:  5'- aGUAGCgGGuUGCUCGGCGGccgGUUGCg -3'
miRNA:   3'- -CGUUGaCC-ACGAGCUGUUcuaCGACG- -5'
26876 3' -50.6 NC_005809.1 + 39510 0.69 0.700655
Target:  5'- uGCGGCUcgGGcGCUUGAC---GUGCUGCu -3'
miRNA:   3'- -CGUUGA--CCaCGAGCUGuucUACGACG- -5'
26876 3' -50.6 NC_005809.1 + 10897 0.69 0.723359
Target:  5'- aGCAguuACUGGUGCUUGugGccGGUGUagGCc -3'
miRNA:   3'- -CGU---UGACCACGAGCugUu-CUACGa-CG- -5'
26876 3' -50.6 NC_005809.1 + 35334 0.69 0.730096
Target:  5'- gGCGGCcgacaucgccgagGGUGagcgCGGCGcAGAUGCUGCc -3'
miRNA:   3'- -CGUUGa------------CCACga--GCUGU-UCUACGACG- -5'
26876 3' -50.6 NC_005809.1 + 20400 0.69 0.734565
Target:  5'- cGCAGaUGGUGCgcgaauUCGGCAAGGacaagUGCaGCa -3'
miRNA:   3'- -CGUUgACCACG------AGCUGUUCU-----ACGaCG- -5'
26876 3' -50.6 NC_005809.1 + 10290 0.68 0.788596
Target:  5'- cGCAacgcGCUGGUGUUUucCuGGAUuGCUGCu -3'
miRNA:   3'- -CGU----UGACCACGAGcuGuUCUA-CGACG- -5'
26876 3' -50.6 NC_005809.1 + 5359 0.68 0.788596
Target:  5'- gGCGACaGccaacaUGCUCGACAGGugcGUGCUGa -3'
miRNA:   3'- -CGUUGaCc-----ACGAGCUGUUC---UACGACg -5'
26876 3' -50.6 NC_005809.1 + 25188 0.67 0.798908
Target:  5'- -aAGC-GGUGCgUCGGCGcGAUGCagGCa -3'
miRNA:   3'- cgUUGaCCACG-AGCUGUuCUACGa-CG- -5'
26876 3' -50.6 NC_005809.1 + 40359 0.67 0.798908
Target:  5'- uGCGcgUGGUGCUaccCGACGAGG-GCgucgGCa -3'
miRNA:   3'- -CGUugACCACGA---GCUGUUCUaCGa---CG- -5'
26876 3' -50.6 NC_005809.1 + 38720 0.67 0.798908
Target:  5'- -aAGCUGGg---CGGCGAGGUGC-GCa -3'
miRNA:   3'- cgUUGACCacgaGCUGUUCUACGaCG- -5'
26876 3' -50.6 NC_005809.1 + 3282 0.67 0.809024
Target:  5'- cGCAACgccGUGCUUccuCGGGAUGCUuuGCg -3'
miRNA:   3'- -CGUUGac-CACGAGcu-GUUCUACGA--CG- -5'
26876 3' -50.6 NC_005809.1 + 21454 0.67 0.809024
Target:  5'- uGCGGCgGGgg--CGGCAGGAUGUUGg -3'
miRNA:   3'- -CGUUGaCCacgaGCUGUUCUACGACg -5'
26876 3' -50.6 NC_005809.1 + 32929 0.67 0.818932
Target:  5'- aCGGCUGcUGUUCGGCcAGGgcgaccacgGCUGCg -3'
miRNA:   3'- cGUUGACcACGAGCUGuUCUa--------CGACG- -5'
26876 3' -50.6 NC_005809.1 + 32711 0.67 0.818932
Target:  5'- aGCAGCgcgccGGUGCcacgcucaUCGACGccgaaaccgAGGUGCaGCg -3'
miRNA:   3'- -CGUUGa----CCACG--------AGCUGU---------UCUACGaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.