Results 1 - 20 of 101 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26876 | 5' | -57.9 | NC_005809.1 | + | 2100 | 0.65 | 0.496598 |
Target: 5'- cAGGUGguCGCCGUGUCGucgguauagauuGCGccGUUGGCg -3' miRNA: 3'- -UCCGC--GCGGUACGGCu-----------CGUu-CAACCG- -5' |
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26876 | 5' | -57.9 | NC_005809.1 | + | 14822 | 0.66 | 0.488266 |
Target: 5'- cGGCGCuGCCuucgcccagGUCGAuGCc-GUUGGCg -3' miRNA: 3'- uCCGCG-CGGua-------CGGCU-CGuuCAACCG- -5' |
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26876 | 5' | -57.9 | NC_005809.1 | + | 790 | 0.66 | 0.488265 |
Target: 5'- cGGGCcgcuGCGCaaucGCCGucAGCAGGUggcugGGCu -3' miRNA: 3'- -UCCG----CGCGgua-CGGC--UCGUUCAa----CCG- -5' |
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26876 | 5' | -57.9 | NC_005809.1 | + | 1085 | 0.66 | 0.488265 |
Target: 5'- cGGCGCGCguacuuCAUGuuG-GCGgcGGUaGGCg -3' miRNA: 3'- uCCGCGCG------GUACggCuCGU--UCAaCCG- -5' |
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26876 | 5' | -57.9 | NC_005809.1 | + | 5121 | 0.66 | 0.487228 |
Target: 5'- cGGCugGCGCCguugaacugcaacGUGCCGcGCAGGc-GGCc -3' miRNA: 3'- uCCG--CGCGG-------------UACGGCuCGUUCaaCCG- -5' |
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26876 | 5' | -57.9 | NC_005809.1 | + | 28444 | 0.66 | 0.477943 |
Target: 5'- aAGGCaaGCCGcugGCCGA-CGAGUacGGCg -3' miRNA: 3'- -UCCGcgCGGUa--CGGCUcGUUCAa-CCG- -5' |
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26876 | 5' | -57.9 | NC_005809.1 | + | 24642 | 0.66 | 0.477943 |
Target: 5'- uGGCGUGCCG-GCgGGcCAGGaUGGUg -3' miRNA: 3'- uCCGCGCGGUaCGgCUcGUUCaACCG- -5' |
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26876 | 5' | -57.9 | NC_005809.1 | + | 2555 | 0.66 | 0.471801 |
Target: 5'- gGGGcCGCGCUcguaauUGCCGGcuuugaguucagcuuGCAaggccagcaGGUUGGCg -3' miRNA: 3'- -UCC-GCGCGGu-----ACGGCU---------------CGU---------UCAACCG- -5' |
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26876 | 5' | -57.9 | NC_005809.1 | + | 18065 | 0.66 | 0.467729 |
Target: 5'- cGGCGCGgggugCGUGCUGGGCcgccgAAGccGGCg -3' miRNA: 3'- uCCGCGCg----GUACGGCUCG-----UUCaaCCG- -5' |
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26876 | 5' | -57.9 | NC_005809.1 | + | 4168 | 0.66 | 0.467729 |
Target: 5'- -uGCGCGCCGUgGUCGAgguguaGCcAGUgGGCg -3' miRNA: 3'- ucCGCGCGGUA-CGGCU------CGuUCAaCCG- -5' |
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26876 | 5' | -57.9 | NC_005809.1 | + | 35337 | 0.66 | 0.464687 |
Target: 5'- cGGCccGCGCCAgugGCCGAaguuGCAgggcuucaucacgcAGUccgaUGGCa -3' miRNA: 3'- uCCG--CGCGGUa--CGGCU----CGU--------------UCA----ACCG- -5' |
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26876 | 5' | -57.9 | NC_005809.1 | + | 28689 | 0.66 | 0.463675 |
Target: 5'- cGGCGCGCCAcgucguucacaagGUCGAuGCu-GUcGGCg -3' miRNA: 3'- uCCGCGCGGUa------------CGGCU-CGuuCAaCCG- -5' |
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26876 | 5' | -57.9 | NC_005809.1 | + | 33266 | 0.66 | 0.457629 |
Target: 5'- cGuGCGcCGCCAggucGCCGAGgAAGUcaaUGcGCa -3' miRNA: 3'- uC-CGC-GCGGUa---CGGCUCgUUCA---AC-CG- -5' |
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26876 | 5' | -57.9 | NC_005809.1 | + | 33565 | 0.66 | 0.451625 |
Target: 5'- uGGUGCGCCGccUGCUGgaagcgcccccgcgcGGCGAGgaaaucgaGGCg -3' miRNA: 3'- uCCGCGCGGU--ACGGC---------------UCGUUCaa------CCG- -5' |
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26876 | 5' | -57.9 | NC_005809.1 | + | 4683 | 0.66 | 0.451625 |
Target: 5'- -aGCGCGCCGgaUagcgcggcgagaaugGCCG-GCAAGUuguUGGCu -3' miRNA: 3'- ucCGCGCGGU--A---------------CGGCuCGUUCA---ACCG- -5' |
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26876 | 5' | -57.9 | NC_005809.1 | + | 4539 | 0.66 | 0.44864 |
Target: 5'- uGGGCG-GUCGUGCCGccgcggaacuggacuGCGguacucauauGGUUGGCu -3' miRNA: 3'- -UCCGCgCGGUACGGCu--------------CGU----------UCAACCG- -5' |
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26876 | 5' | -57.9 | NC_005809.1 | + | 21389 | 0.66 | 0.447647 |
Target: 5'- uGGCGCGCUggGCCuGcGCGAGcaUGGa -3' miRNA: 3'- uCCGCGCGGuaCGG-CuCGUUCa-ACCg -5' |
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26876 | 5' | -57.9 | NC_005809.1 | + | 190 | 0.66 | 0.447647 |
Target: 5'- uGGGCacCGUCAcgcUGCCGGGCGAcacGGCg -3' miRNA: 3'- -UCCGc-GCGGU---ACGGCUCGUUcaaCCG- -5' |
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26876 | 5' | -57.9 | NC_005809.1 | + | 27765 | 0.66 | 0.447647 |
Target: 5'- aAGGCaGCGCC--GCCGAgguGCAGGUUuccaGCg -3' miRNA: 3'- -UCCG-CGCGGuaCGGCU---CGUUCAAc---CG- -5' |
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26876 | 5' | -57.9 | NC_005809.1 | + | 41887 | 0.66 | 0.447647 |
Target: 5'- uGGGCG-GCCcgGCCGGcGCcgccGUaGGCg -3' miRNA: 3'- -UCCGCgCGGuaCGGCU-CGuu--CAaCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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