miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26876 5' -57.9 NC_005809.1 + 22564 1.12 0.000207
Target:  5'- cAGGCGCGCCAUGCCGAGCAAGUUGGCg -3'
miRNA:   3'- -UCCGCGCGGUACGGCUCGUUCAACCG- -5'
26876 5' -57.9 NC_005809.1 + 12561 0.75 0.119106
Target:  5'- aGGGCGCgGCCGUGCaguugGAGCAcGaUGGCc -3'
miRNA:   3'- -UCCGCG-CGGUACGg----CUCGUuCaACCG- -5'
26876 5' -57.9 NC_005809.1 + 13900 0.75 0.122532
Target:  5'- uGGCGCGCCGcGCUG-GCGAGgccgccGGCa -3'
miRNA:   3'- uCCGCGCGGUaCGGCuCGUUCaa----CCG- -5'
26876 5' -57.9 NC_005809.1 + 29949 0.74 0.14107
Target:  5'- cGGCaGCaGCgAUGCCGAGCGcGUcGGCg -3'
miRNA:   3'- uCCG-CG-CGgUACGGCUCGUuCAaCCG- -5'
26876 5' -57.9 NC_005809.1 + 26113 0.73 0.163949
Target:  5'- -cGUGCGCCAUGCCG-GCAuguGUucgucgcggcagauuUGGCg -3'
miRNA:   3'- ucCGCGCGGUACGGCuCGUu--CA---------------ACCG- -5'
26876 5' -57.9 NC_005809.1 + 26833 0.73 0.171343
Target:  5'- gAGGUGCGgUAUGUCGAGCGca-UGGCc -3'
miRNA:   3'- -UCCGCGCgGUACGGCUCGUucaACCG- -5'
26876 5' -57.9 NC_005809.1 + 35489 0.73 0.181004
Target:  5'- uGGGCGCGCCGUggguagGCCGcGGCGucaugaAGUaccUGGCc -3'
miRNA:   3'- -UCCGCGCGGUA------CGGC-UCGU------UCA---ACCG- -5'
26876 5' -57.9 NC_005809.1 + 16039 0.73 0.181004
Target:  5'- aGGGCgGCGCCAUGCUGAaaaccgUGGCg -3'
miRNA:   3'- -UCCG-CGCGGUACGGCUcguucaACCG- -5'
26876 5' -57.9 NC_005809.1 + 26007 0.72 0.184497
Target:  5'- cGGCGCGUCGcGCUacaacgucuauaagGAGCAAGgcGGCc -3'
miRNA:   3'- uCCGCGCGGUaCGG--------------CUCGUUCaaCCG- -5'
26876 5' -57.9 NC_005809.1 + 12909 0.72 0.191144
Target:  5'- cGGcCGCGCCcUGCUGGGCAAc--GGCu -3'
miRNA:   3'- uCC-GCGCGGuACGGCUCGUUcaaCCG- -5'
26876 5' -57.9 NC_005809.1 + 805 0.72 0.193231
Target:  5'- cGGCgacGCGCCGcgcccagcccuUGCCGAacgucggccagguggGCAGGUUGGUg -3'
miRNA:   3'- uCCG---CGCGGU-----------ACGGCU---------------CGUUCAACCG- -5'
26876 5' -57.9 NC_005809.1 + 13144 0.72 0.201779
Target:  5'- uGGGCGCGaCGUG-CGAGCGcGUgGGCa -3'
miRNA:   3'- -UCCGCGCgGUACgGCUCGUuCAaCCG- -5'
26876 5' -57.9 NC_005809.1 + 24184 0.72 0.20178
Target:  5'- cGGCGUGuCCAUGagcgCGAGCAcGUaGGCg -3'
miRNA:   3'- uCCGCGC-GGUACg---GCUCGUuCAaCCG- -5'
26876 5' -57.9 NC_005809.1 + 3722 0.72 0.207288
Target:  5'- uGGCGC-CCGUGCCGuucacGCcGGUggugGGCa -3'
miRNA:   3'- uCCGCGcGGUACGGCu----CGuUCAa---CCG- -5'
26876 5' -57.9 NC_005809.1 + 25801 0.72 0.209527
Target:  5'- cGGCGCGCUcgGuaucguugaucugcaCCGGGCcgccGUUGGCg -3'
miRNA:   3'- uCCGCGCGGuaC---------------GGCUCGuu--CAACCG- -5'
26876 5' -57.9 NC_005809.1 + 4181 0.72 0.212925
Target:  5'- cGGC-CGCCucgAUGgCGGGCAuGUUGGCc -3'
miRNA:   3'- uCCGcGCGG---UACgGCUCGUuCAACCG- -5'
26876 5' -57.9 NC_005809.1 + 12683 0.71 0.224596
Target:  5'- cGGCcUGUCAUGCCGGGgGGGggUGGUg -3'
miRNA:   3'- uCCGcGCGGUACGGCUCgUUCa-ACCG- -5'
26876 5' -57.9 NC_005809.1 + 25486 0.71 0.230633
Target:  5'- aGGGCGCGCuCGUGCUuGGuCAGGgucaGGCc -3'
miRNA:   3'- -UCCGCGCG-GUACGGcUC-GUUCaa--CCG- -5'
26876 5' -57.9 NC_005809.1 + 12157 0.71 0.236806
Target:  5'- -cGCGCucaucGCCAUGCCGAGCGAaagcgUGGa -3'
miRNA:   3'- ucCGCG-----CGGUACGGCUCGUUca---ACCg -5'
26876 5' -57.9 NC_005809.1 + 24598 0.71 0.236806
Target:  5'- cGGCGUGuCCuUGCCGGGguAGgucagcGGCa -3'
miRNA:   3'- uCCGCGC-GGuACGGCUCguUCaa----CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.