miRNA display CGI


Results 21 - 40 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26876 5' -57.9 NC_005809.1 + 36220 0.67 0.437787
Target:  5'- -aGCGCcccgGCCuucggGCCGGGCGcuUUGGCu -3'
miRNA:   3'- ucCGCG----CGGua---CGGCUCGUucAACCG- -5'
26876 5' -57.9 NC_005809.1 + 9651 0.67 0.437786
Target:  5'- uGGcCGaacaGCCA-GCCGuGCAGGccgUGGCc -3'
miRNA:   3'- uCC-GCg---CGGUaCGGCuCGUUCa--ACCG- -5'
26876 5' -57.9 NC_005809.1 + 34501 0.67 0.431931
Target:  5'- cGuGCGCGCCuugggcggugaacugAUgGUCGAGCAgcGGUUGaGCg -3'
miRNA:   3'- uC-CGCGCGG---------------UA-CGGCUCGU--UCAAC-CG- -5'
26876 5' -57.9 NC_005809.1 + 3926 0.67 0.428052
Target:  5'- gGGGCGCGC--UGCCGuccGCGA--UGGUc -3'
miRNA:   3'- -UCCGCGCGguACGGCu--CGUUcaACCG- -5'
26876 5' -57.9 NC_005809.1 + 11509 0.67 0.428052
Target:  5'- aGGGCaGCGCCugcGCUGGcgugaggcccuGCGAGcgGGCa -3'
miRNA:   3'- -UCCG-CGCGGua-CGGCU-----------CGUUCaaCCG- -5'
26876 5' -57.9 NC_005809.1 + 8748 0.67 0.428052
Target:  5'- aGGGCGCGCgcguauucaCGUGCCGcuucgGGCAGcacgcGGCg -3'
miRNA:   3'- -UCCGCGCG---------GUACGGC-----UCGUUcaa--CCG- -5'
26876 5' -57.9 NC_005809.1 + 24297 0.67 0.428052
Target:  5'- cGGCcCGCUgacgGCCG-GCAAGUUcucGGCg -3'
miRNA:   3'- uCCGcGCGGua--CGGCuCGUUCAA---CCG- -5'
26876 5' -57.9 NC_005809.1 + 9364 0.67 0.428052
Target:  5'- cGGUG-GCCGUGCCGGauucGCcAGcggUGGCc -3'
miRNA:   3'- uCCGCgCGGUACGGCU----CGuUCa--ACCG- -5'
26876 5' -57.9 NC_005809.1 + 9220 0.67 0.428052
Target:  5'- cGGUG-GCCGUGCCGGauucGCcAGcggUGGCc -3'
miRNA:   3'- uCCGCgCGGUACGGCU----CGuUCa--ACCG- -5'
26876 5' -57.9 NC_005809.1 + 27435 0.67 0.427085
Target:  5'- uGGGCGCauccgccGCCAgcaugggGUCGGGCcuGGUaGGCa -3'
miRNA:   3'- -UCCGCG-------CGGUa------CGGCUCGu-UCAaCCG- -5'
26876 5' -57.9 NC_005809.1 + 30122 0.67 0.422273
Target:  5'- gAGGcCGCGCCAgaacacgccGCCGGccugcaccGCGucggacaucagcggcAGUUGGCg -3'
miRNA:   3'- -UCC-GCGCGGUa--------CGGCU--------CGU---------------UCAACCG- -5'
26876 5' -57.9 NC_005809.1 + 12464 0.67 0.418446
Target:  5'- uGGCGCgGCCucaucGCCuGGGaCAAGggccgUGGCg -3'
miRNA:   3'- uCCGCG-CGGua---CGG-CUC-GUUCa----ACCG- -5'
26876 5' -57.9 NC_005809.1 + 28940 0.67 0.417493
Target:  5'- cGGCGCGCCGgacuugcUGCCGcuaccgauGCu-GUcGGCa -3'
miRNA:   3'- uCCGCGCGGU-------ACGGCu-------CGuuCAaCCG- -5'
26876 5' -57.9 NC_005809.1 + 18639 0.67 0.412746
Target:  5'- cGGGCGUgcgccugaccaucacGCCuAUGCCGGcauggaagccGCGGGcgUGGCg -3'
miRNA:   3'- -UCCGCG---------------CGG-UACGGCU----------CGUUCa-ACCG- -5'
26876 5' -57.9 NC_005809.1 + 17303 0.67 0.403354
Target:  5'- cGGGCGCGCauccauuccggcauaUggGCCGGcuuggucuuGCGuuGGUUGGCa -3'
miRNA:   3'- -UCCGCGCG---------------GuaCGGCU---------CGU--UCAACCG- -5'
26876 5' -57.9 NC_005809.1 + 40320 0.67 0.399635
Target:  5'- uGGuGCGCGUCGaacUGCCGGcCAAGgcccGGCg -3'
miRNA:   3'- -UC-CGCGCGGU---ACGGCUcGUUCaa--CCG- -5'
26876 5' -57.9 NC_005809.1 + 9028 0.67 0.399635
Target:  5'- cGGUG-GCCGUGCCGuaauuGCcAGcggUGGCc -3'
miRNA:   3'- uCCGCgCGGUACGGCu----CGuUCa--ACCG- -5'
26876 5' -57.9 NC_005809.1 + 9076 0.67 0.399635
Target:  5'- cGGUG-GCCGUGCCGuaauuGCcAGcggUGGCc -3'
miRNA:   3'- uCCGCgCGGUACGGCu----CGuUCa--ACCG- -5'
26876 5' -57.9 NC_005809.1 + 32123 0.67 0.399635
Target:  5'- aGGGCGaCGCCAagggcgccauUGCCaAGCu-GUUGGa -3'
miRNA:   3'- -UCCGC-GCGGU----------ACGGcUCGuuCAACCg -5'
26876 5' -57.9 NC_005809.1 + 9316 0.67 0.399635
Target:  5'- cGGUG-GCCGUGCCGuaauuGCcAGcggUGGCc -3'
miRNA:   3'- uCCGCgCGGUACGGCu----CGuUCa--ACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.