Results 1 - 20 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26877 | 3' | -58.3 | NC_005809.1 | + | 35835 | 0.66 | 0.46216 |
Target: 5'- -uUCCGCUAUUGaGcGCGGcggcccagcGCAGCGGCu -3' miRNA: 3'- uuGGGCGAUGAC-CaCGCC---------CGUUGCUG- -5' |
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26877 | 3' | -58.3 | NC_005809.1 | + | 17496 | 0.66 | 0.46216 |
Target: 5'- gGGCgCGCUgcGCUGGgugGCGaugcugcccgauGGUAACGGCg -3' miRNA: 3'- -UUGgGCGA--UGACCa--CGC------------CCGUUGCUG- -5' |
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26877 | 3' | -58.3 | NC_005809.1 | + | 30368 | 0.66 | 0.461149 |
Target: 5'- gAACCCGCcgcUGCUGuaggGUGGGUcggugauAACGGCg -3' miRNA: 3'- -UUGGGCG---AUGACca--CGCCCG-------UUGCUG- -5' |
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26877 | 3' | -58.3 | NC_005809.1 | + | 9315 | 0.66 | 0.452103 |
Target: 5'- cGACCUgGCgGCgcacgucGGcgcgGCGGGCGGCGGCa -3' miRNA: 3'- -UUGGG-CGaUGa------CCa---CGCCCGUUGCUG- -5' |
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26877 | 3' | -58.3 | NC_005809.1 | + | 13514 | 0.66 | 0.436264 |
Target: 5'- uGACCCGCUGaUGGccuacgagccgccgGUGGGUAuCGACc -3' miRNA: 3'- -UUGGGCGAUgACCa-------------CGCCCGUuGCUG- -5' |
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26877 | 3' | -58.3 | NC_005809.1 | + | 2353 | 0.66 | 0.422672 |
Target: 5'- cGAUCUGUUGCUGG-GCaaacGGCAACGGu -3' miRNA: 3'- -UUGGGCGAUGACCaCGc---CCGUUGCUg -5' |
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26877 | 3' | -58.3 | NC_005809.1 | + | 34173 | 0.66 | 0.422672 |
Target: 5'- uGCUCGCUGCccgacacGUGGGCGGCGAUu -3' miRNA: 3'- uUGGGCGAUGacca---CGCCCGUUGCUG- -5' |
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26877 | 3' | -58.3 | NC_005809.1 | + | 39635 | 0.67 | 0.403702 |
Target: 5'- cGugCCGCgcgACgcGGUGUGGGC--CGGCa -3' miRNA: 3'- -UugGGCGa--UGa-CCACGCCCGuuGCUG- -5' |
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26877 | 3' | -58.3 | NC_005809.1 | + | 32091 | 0.67 | 0.393501 |
Target: 5'- cGGCCCGUUcggGCcGGUGCugcgcgacuuccaGGGCGACGcCa -3' miRNA: 3'- -UUGGGCGA---UGaCCACG-------------CCCGUUGCuG- -5' |
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26877 | 3' | -58.3 | NC_005809.1 | + | 4354 | 0.67 | 0.376279 |
Target: 5'- uGGCCguugCGUUGCcGGUGCGcgugaaGGCGACGGCc -3' miRNA: 3'- -UUGG----GCGAUGaCCACGC------CCGUUGCUG- -5' |
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26877 | 3' | -58.3 | NC_005809.1 | + | 41572 | 0.67 | 0.367422 |
Target: 5'- -uCCCgGCcAgUGGcGCGGGCAGCGGg -3' miRNA: 3'- uuGGG-CGaUgACCaCGCCCGUUGCUg -5' |
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26877 | 3' | -58.3 | NC_005809.1 | + | 23894 | 0.67 | 0.367422 |
Target: 5'- aGGCCCGCg--UGGUGUaacaggccggGGGCgGGCGACc -3' miRNA: 3'- -UUGGGCGaugACCACG----------CCCG-UUGCUG- -5' |
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26877 | 3' | -58.3 | NC_005809.1 | + | 36020 | 0.68 | 0.341721 |
Target: 5'- gGAUgCGCUGacgcCUGGcgauuCGGGCGACGACg -3' miRNA: 3'- -UUGgGCGAU----GACCac---GCCCGUUGCUG- -5' |
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26877 | 3' | -58.3 | NC_005809.1 | + | 6340 | 0.68 | 0.333447 |
Target: 5'- gAACUCGCc-CUGGUGCgucuGGGUGGCGAa -3' miRNA: 3'- -UUGGGCGauGACCACG----CCCGUUGCUg -5' |
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26877 | 3' | -58.3 | NC_005809.1 | + | 15049 | 0.68 | 0.325321 |
Target: 5'- uGCCCGCgu-UGaUGCGGGCAAuguuCGACu -3' miRNA: 3'- uUGGGCGaugACcACGCCCGUU----GCUG- -5' |
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26877 | 3' | -58.3 | NC_005809.1 | + | 32460 | 0.68 | 0.325321 |
Target: 5'- cGCCCcCUACUgccgaGGUGgGGGCGGcCGAUg -3' miRNA: 3'- uUGGGcGAUGA-----CCACgCCCGUU-GCUG- -5' |
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26877 | 3' | -58.3 | NC_005809.1 | + | 35161 | 0.68 | 0.324517 |
Target: 5'- cGCCCGCUGCUcuauacccuguccGGUcuguauuCGGGCGucaACGACg -3' miRNA: 3'- uUGGGCGAUGA-------------CCAc------GCCCGU---UGCUG- -5' |
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26877 | 3' | -58.3 | NC_005809.1 | + | 31085 | 0.69 | 0.294299 |
Target: 5'- gGugCCGCUGCUcaccucGGUGCaGGcCGGCGAg -3' miRNA: 3'- -UugGGCGAUGA------CCACGcCC-GUUGCUg -5' |
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26877 | 3' | -58.3 | NC_005809.1 | + | 8553 | 0.69 | 0.286913 |
Target: 5'- cAGCCgCGCcgAUg---GCGGGCAGCGACa -3' miRNA: 3'- -UUGG-GCGa-UGaccaCGCCCGUUGCUG- -5' |
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26877 | 3' | -58.3 | NC_005809.1 | + | 23176 | 0.7 | 0.252166 |
Target: 5'- cGGCCCcCUGCUGGUGCGacaGCAGCa-- -3' miRNA: 3'- -UUGGGcGAUGACCACGCc--CGUUGcug -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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