miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26877 5' -56 NC_005809.1 + 17095 0.66 0.596537
Target:  5'- cGCGGUucuCGGCCGGgCCuuGGGGCu-- -3'
miRNA:   3'- -CGUCGuu-GUCGGCUgGGu-CCUCGuuc -5'
26877 5' -56 NC_005809.1 + 16297 0.66 0.596537
Target:  5'- cGCGcGCGAUgcgcgAGCCGACC-AGGccGGCGGGu -3'
miRNA:   3'- -CGU-CGUUG-----UCGGCUGGgUCC--UCGUUC- -5'
26877 5' -56 NC_005809.1 + 18804 0.66 0.596537
Target:  5'- cGUAGCcGCGGCgcauCGGCCCGGuGGCGc- -3'
miRNA:   3'- -CGUCGuUGUCG----GCUGGGUCcUCGUuc -5'
26877 5' -56 NC_005809.1 + 26830 0.66 0.585338
Target:  5'- gGCAgGCuGC-GCCGcCCCGauGGAGCGGGc -3'
miRNA:   3'- -CGU-CGuUGuCGGCuGGGU--CCUCGUUC- -5'
26877 5' -56 NC_005809.1 + 8234 0.66 0.585338
Target:  5'- gGCGGCcgucAGCAGCuugcgcuucaagCGGCCCAGGuGUucGa -3'
miRNA:   3'- -CGUCG----UUGUCG------------GCUGGGUCCuCGuuC- -5'
26877 5' -56 NC_005809.1 + 37954 0.66 0.58422
Target:  5'- gGCAGCGcgggccaacauugGCcuGGCUGACCUGGGcGGCAu- -3'
miRNA:   3'- -CGUCGU-------------UG--UCGGCUGGGUCC-UCGUuc -5'
26877 5' -56 NC_005809.1 + 2660 0.66 0.578637
Target:  5'- -gGGcCAGCGGUCG-CCCAGGuguucgaucagccacGGCAGGu -3'
miRNA:   3'- cgUC-GUUGUCGGCuGGGUCC---------------UCGUUC- -5'
26877 5' -56 NC_005809.1 + 24562 0.66 0.574178
Target:  5'- cGCGGCGAUggcgaGGCCGGCCaCGGucGGGCc-- -3'
miRNA:   3'- -CGUCGUUG-----UCGGCUGG-GUC--CUCGuuc -5'
26877 5' -56 NC_005809.1 + 33012 0.66 0.574178
Target:  5'- cCAGCGACAGCaucaCGAUgCUGGGcGGCAAGu -3'
miRNA:   3'- cGUCGUUGUCG----GCUG-GGUCC-UCGUUC- -5'
26877 5' -56 NC_005809.1 + 689 0.66 0.574178
Target:  5'- gGCGGCGccgGCcgGGCCGcccaagauaccGCCCAGGAuaGGGg -3'
miRNA:   3'- -CGUCGU---UG--UCGGC-----------UGGGUCCUcgUUC- -5'
26877 5' -56 NC_005809.1 + 11418 0.66 0.574178
Target:  5'- aGCAGCGGCgAGCCGGCgugCAGGucGCc-- -3'
miRNA:   3'- -CGUCGUUG-UCGGCUGg--GUCCu-CGuuc -5'
26877 5' -56 NC_005809.1 + 16224 0.66 0.574178
Target:  5'- -gAGCAGCAGCa-ACUCGGuGAGCGGc -3'
miRNA:   3'- cgUCGUUGUCGgcUGGGUC-CUCGUUc -5'
26877 5' -56 NC_005809.1 + 42046 0.66 0.563069
Target:  5'- cGCGGUGACGGCCGAacagaaCCGccuGCAAGc -3'
miRNA:   3'- -CGUCGUUGUCGGCUg-----GGUccuCGUUC- -5'
26877 5' -56 NC_005809.1 + 5948 0.66 0.563069
Target:  5'- aGC-GCAACGGuguaguCCGuACCCAGGGuCAAGg -3'
miRNA:   3'- -CGuCGUUGUC------GGC-UGGGUCCUcGUUC- -5'
26877 5' -56 NC_005809.1 + 24076 0.66 0.552019
Target:  5'- aCAGUAGCGG-CGACCgCGcGGGGCAc- -3'
miRNA:   3'- cGUCGUUGUCgGCUGG-GU-CCUCGUuc -5'
26877 5' -56 NC_005809.1 + 13683 0.66 0.552019
Target:  5'- uCGGCGACGGCCagcaacuACgCCAGcAGCGAGg -3'
miRNA:   3'- cGUCGUUGUCGGc------UG-GGUCcUCGUUC- -5'
26877 5' -56 NC_005809.1 + 23086 0.66 0.552019
Target:  5'- --cGCAGCGGCCuGCCCAccggcaccuGGcGCAAGc -3'
miRNA:   3'- cguCGUUGUCGGcUGGGU---------CCuCGUUC- -5'
26877 5' -56 NC_005809.1 + 41532 0.66 0.550917
Target:  5'- cGCGGCGACAugcugccGCCGGCCguGGccuucCAGGu -3'
miRNA:   3'- -CGUCGUUGU-------CGGCUGGguCCuc---GUUC- -5'
26877 5' -56 NC_005809.1 + 35315 0.66 0.550917
Target:  5'- aGCAGCAguucaagaccuggGCGGCCGACaucgCCGaGGGUGAGc -3'
miRNA:   3'- -CGUCGU-------------UGUCGGCUG----GGUcCUCGUUC- -5'
26877 5' -56 NC_005809.1 + 27991 0.66 0.541034
Target:  5'- aGCGGau-CGGCCGccggcaucaGCCCgguAGGGGCGGGu -3'
miRNA:   3'- -CGUCguuGUCGGC---------UGGG---UCCUCGUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.