Results 1 - 11 of 11 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26878 | 3' | -55.1 | NC_005809.1 | + | 6817 | 0.66 | 0.628732 |
Target: 5'- ---cUGGGGucgauCAGGAACGAuGCGgAGa -3' miRNA: 3'- auaaGCCCCu----GUCCUUGCU-CGCgUCc -5' |
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26878 | 3' | -55.1 | NC_005809.1 | + | 18039 | 0.66 | 0.628732 |
Target: 5'- --gUCGGcGGGCugcuuGGGGGCcuuaccGGCGCGGGg -3' miRNA: 3'- auaAGCC-CCUG-----UCCUUGc-----UCGCGUCC- -5' |
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26878 | 3' | -55.1 | NC_005809.1 | + | 15295 | 0.66 | 0.617507 |
Target: 5'- -uUUCGGcGACAGGA-CGAGCGgAa- -3' miRNA: 3'- auAAGCCcCUGUCCUuGCUCGCgUcc -5' |
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26878 | 3' | -55.1 | NC_005809.1 | + | 10448 | 0.67 | 0.595108 |
Target: 5'- gAUUCGGGGGCGucgaggucGGcAGCG-GC-CAGGg -3' miRNA: 3'- aUAAGCCCCUGU--------CC-UUGCuCGcGUCC- -5' |
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26878 | 3' | -55.1 | NC_005809.1 | + | 6160 | 0.67 | 0.582839 |
Target: 5'- ----aGGGGugAGGcACGGGCacccuuaGCGGGc -3' miRNA: 3'- auaagCCCCugUCCuUGCUCG-------CGUCC- -5' |
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26878 | 3' | -55.1 | NC_005809.1 | + | 40096 | 0.67 | 0.577279 |
Target: 5'- ---gUGGGGGCAGGcuugguuccuggacaAagGCGAGCGCcuGGGc -3' miRNA: 3'- auaaGCCCCUGUCC---------------U--UGCUCGCG--UCC- -5' |
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26878 | 3' | -55.1 | NC_005809.1 | + | 23568 | 0.67 | 0.572839 |
Target: 5'- --aUCGccGGCAGGuGCGGGCGgGGGg -3' miRNA: 3'- auaAGCccCUGUCCuUGCUCGCgUCC- -5' |
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26878 | 3' | -55.1 | NC_005809.1 | + | 14375 | 0.67 | 0.561776 |
Target: 5'- ---gCGGGGGCAuccgcgccgcGGAACGuaGGCGUAGc -3' miRNA: 3'- auaaGCCCCUGU----------CCUUGC--UCGCGUCc -5' |
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26878 | 3' | -55.1 | NC_005809.1 | + | 16468 | 0.68 | 0.539834 |
Target: 5'- --aUCGGGGGCGugacGGAcagguCGGGCGCGa- -3' miRNA: 3'- auaAGCCCCUGU----CCUu----GCUCGCGUcc -5' |
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26878 | 3' | -55.1 | NC_005809.1 | + | 24299 | 0.68 | 0.528972 |
Target: 5'- ---gUGGGGGCGGuGAggucgGCGAGCagccGCGGGu -3' miRNA: 3'- auaaGCCCCUGUC-CU-----UGCUCG----CGUCC- -5' |
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26878 | 3' | -55.1 | NC_005809.1 | + | 21932 | 1.03 | 0.002144 |
Target: 5'- aUAUUCGGGGACAGGAACGAGCGCAGc -3' miRNA: 3'- -AUAAGCCCCUGUCCUUGCUCGCGUCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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