Results 1 - 20 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26878 | 5' | -62.4 | NC_005809.1 | + | 11693 | 0.74 | 0.068195 |
Target: 5'- aGACUgcgGCGGacuuaGCCGCUUGGCGAGGu- -3' miRNA: 3'- -CUGGa--CGCUg----CGGCGGACCGCUCCuu -5' |
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26878 | 5' | -62.4 | NC_005809.1 | + | 12012 | 0.66 | 0.293364 |
Target: 5'- cGGCCaGCaGCGCgGCCguggccGGCGAGGu- -3' miRNA: 3'- -CUGGaCGcUGCGgCGGa-----CCGCUCCuu -5' |
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26878 | 5' | -62.4 | NC_005809.1 | + | 4785 | 0.66 | 0.279169 |
Target: 5'- cACaCUGCGcccagcACGCCGgCUGGCGcugcGGGAu -3' miRNA: 3'- cUG-GACGC------UGCGGCgGACCGC----UCCUu -5' |
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26878 | 5' | -62.4 | NC_005809.1 | + | 9315 | 0.67 | 0.216312 |
Target: 5'- cGACCUgGCGGCGCaCGUCggcgcGGCGGGcGGc -3' miRNA: 3'- -CUGGA-CGCUGCG-GCGGa----CCGCUC-CUu -5' |
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26878 | 5' | -62.4 | NC_005809.1 | + | 38074 | 0.68 | 0.184712 |
Target: 5'- cGCCUGUGGCGCCGCgCgcauccGGCGGuuucgucguucuGGAAg -3' miRNA: 3'- cUGGACGCUGCGGCG-Ga-----CCGCU------------CCUU- -5' |
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26878 | 5' | -62.4 | NC_005809.1 | + | 23934 | 0.71 | 0.110067 |
Target: 5'- aGGCgUGauggucaGGCGCCGCCcGGCGAGGu- -3' miRNA: 3'- -CUGgACg------CUGCGGCGGaCCGCUCCuu -5' |
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26878 | 5' | -62.4 | NC_005809.1 | + | 13483 | 0.72 | 0.104103 |
Target: 5'- uGACCUggGCGAUGCCGaCCgcgccuuugGGCGAGGu- -3' miRNA: 3'- -CUGGA--CGCUGCGGC-GGa--------CCGCUCCuu -5' |
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26878 | 5' | -62.4 | NC_005809.1 | + | 37703 | 0.72 | 0.101237 |
Target: 5'- --aUUGCGugGCuCGCC-GGCGAGGAu -3' miRNA: 3'- cugGACGCugCG-GCGGaCCGCUCCUu -5' |
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26878 | 5' | -62.4 | NC_005809.1 | + | 20521 | 0.68 | 0.18968 |
Target: 5'- cGACCcgagcaagcGCGACGaCCGCaacaUGGCGuGGAAg -3' miRNA: 3'- -CUGGa--------CGCUGC-GGCGg---ACCGCuCCUU- -5' |
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26878 | 5' | -62.4 | NC_005809.1 | + | 13108 | 0.68 | 0.18968 |
Target: 5'- uGGCCgcGCGcuuCGUCGCCUGGUGccAGGAGc -3' miRNA: 3'- -CUGGa-CGCu--GCGGCGGACCGC--UCCUU- -5' |
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26878 | 5' | -62.4 | NC_005809.1 | + | 19045 | 0.68 | 0.184712 |
Target: 5'- cGACC-GCGuGCGCCGCCUGGa-AGGc- -3' miRNA: 3'- -CUGGaCGC-UGCGGCGGACCgcUCCuu -5' |
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26878 | 5' | -62.4 | NC_005809.1 | + | 7556 | 0.68 | 0.184712 |
Target: 5'- cGAUCUGCGGCGCCaCC-GGCuuGGAc -3' miRNA: 3'- -CUGGACGCUGCGGcGGaCCGcuCCUu -5' |
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26878 | 5' | -62.4 | NC_005809.1 | + | 15141 | 0.69 | 0.179859 |
Target: 5'- gGGCCUGCG--GCCGCCgGGCGcGGu- -3' miRNA: 3'- -CUGGACGCugCGGCGGaCCGCuCCuu -5' |
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26878 | 5' | -62.4 | NC_005809.1 | + | 38709 | 0.69 | 0.157259 |
Target: 5'- cGGCCUacaGCGACGgCGCCUGGUacaacuucgccGAGGu- -3' miRNA: 3'- -CUGGA---CGCUGCgGCGGACCG-----------CUCCuu -5' |
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26878 | 5' | -62.4 | NC_005809.1 | + | 8471 | 0.69 | 0.157259 |
Target: 5'- uGGCCUGCGAUGCCGCagccgacGCGAGu-- -3' miRNA: 3'- -CUGGACGCUGCGGCGgac----CGCUCcuu -5' |
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26878 | 5' | -62.4 | NC_005809.1 | + | 33573 | 0.7 | 0.148959 |
Target: 5'- cGCCUGCuggaaGCGCCcCCgcgcGGCGAGGAAa -3' miRNA: 3'- cUGGACGc----UGCGGcGGa---CCGCUCCUU- -5' |
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26878 | 5' | -62.4 | NC_005809.1 | + | 42426 | 0.7 | 0.147749 |
Target: 5'- cGCCUGCGGgGaaGCCUGGCGccacgccguagcuuGGGAc -3' miRNA: 3'- cUGGACGCUgCggCGGACCGC--------------UCCUu -5' |
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26878 | 5' | -62.4 | NC_005809.1 | + | 5353 | 0.7 | 0.141061 |
Target: 5'- cGCgCUGCGugGCCGCCUGcaccGCGcccAGGGu -3' miRNA: 3'- cUG-GACGCugCGGCGGAC----CGC---UCCUu -5' |
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26878 | 5' | -62.4 | NC_005809.1 | + | 13883 | 0.74 | 0.069963 |
Target: 5'- cGACCUugugaacgacgugGCG-CGCCGCgCUGGCGAGGc- -3' miRNA: 3'- -CUGGA-------------CGCuGCGGCG-GACCGCUCCuu -5' |
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26878 | 5' | -62.4 | NC_005809.1 | + | 5146 | 0.66 | 0.293364 |
Target: 5'- uGCCgcgcagGCGGCcGUCGCUgcucacgcccuUGGCGAGGGu -3' miRNA: 3'- cUGGa-----CGCUG-CGGCGG-----------ACCGCUCCUu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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